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JSantini_S4_scaffold_2

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Displaying items 1-30 of 166 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_S4_scaffold_2_1
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(378..1220)
DNA (843bp) protein (281aa)
Hsp33 protein
Hsp33 protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU28_9GAMM
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_2
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1213..1983)
DNA (771bp) protein (257aa)
PP-loop domain-containing protein
PP-loop domain protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU29_9GAMM
PP-loop domain protein {ECO:0000313|EMBL:AEM47881.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_3
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1985..2935)
DNA (951bp) protein (317aa)
rfaE bifunctional protein
RfaE bifunctional protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU30_9GAMM
RfaE bifunctional protein {ECO:0000313|EMBL:AEM47882.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_4
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2937..4259)
DNA (1323bp) protein (441aa)
nucleotide sugar dehydrogenase
Nucleotide sugar dehydrogenase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU31_9GAMM
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:AEM47883.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_5
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4256..4651)
DNA (396bp) protein (132aa)
holo-ACP synthase
Holo-[acyl-carrier-protein] synthase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU32_9GAMM
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_2_6
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4648..5373)
DNA (726bp) protein (242aa)
pyridoxine 5'-phosphate synthase
Pyridoxine 5'-phosphate synthase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU33_9GAMM
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_7
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5370..6137)
DNA (768bp) protein (256aa)
DNA repair protein recO
DNA repair protein RecO n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU34_9GAMM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_8
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6127..7041)
DNA (915bp) protein (305aa)
GTP-binding protein Era-like-protein
GTPase Era n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU35_9GAMM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_9
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7034..7714)
DNA (681bp) protein (227aa)
ribonuclease 3
Ribonuclease 3 n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU36_9GAMM
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_2_10
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7781..8215)
DNA (435bp) protein (145aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU37_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:AEM47889.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_11
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8301..9092)
DNA (792bp) protein (264aa)
signal peptidase I
Signal peptidase I n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU38_9GAMM
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_2_12
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9160..10962)
DNA (1803bp) protein (601aa)
GTP-binding protein lepA
Elongation factor 4 n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU39_9GAMM
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_13
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11067..12557)
DNA (1491bp) protein (497aa)
protease Do
Protease Do n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU40_9GAMM
Peptidase S1 {ECO:0000313|EMBL:CDQ10410.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_2_14
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12687..13340)
DNA (654bp) protein (218aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU41_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:AEM47893.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_15
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13337..13963)
DNA (627bp) protein (209aa)
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase sigma factor n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU42_9GAMM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_2_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14080..15669
DNA (1590bp) protein (530aa)
L-aspartate oxidase
L-aspartate oxidase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU43_9GAMM
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_17
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15614..16078)
DNA (465bp) protein (155aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU44_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:AEM47896.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_18
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16128..17093
DNA (966bp) protein (322aa)
folate-binding protein YgfZ
Folate-binding protein YgfZ n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU45_9GAMM
Folate-binding protein YgfZ {ECO:0000313|EMBL:AEM47897.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_19
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17097..17447
DNA (351bp) protein (117aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU46_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:AEM47898.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_2_20
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17918..18304
DNA (387bp) protein (129aa)
Outer membrane protein (OmpA/MotB precursor)
peptidoglycan-associated outer membrane lipoprotein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624A7C
Peptidoglycan-associated outer membrane lipoprotein {ECO:0000313|EMBL:AEK59452.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_S4_scaffold_2_21
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19144..20319)
DNA (1176bp) protein (392aa)
D-alanyl-D-alanine carboxypeptidase
peptidase M15 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C35
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:AEK59339.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_S4_scaffold_2_22
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20344..21825)
DNA (1482bp) protein (494aa)
serine protease MucD
serine protease n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C36
Serine protease MucD {ECO:0000313|EMBL:AEK59338.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_S4_scaffold_2_23
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22275..24122
DNA (1848bp) protein (616aa)
Penicillin-binding protein 2 (PBP-2)
Penicillin-binding protein 2 n=2 Tax=Acidithiobacillus caldus RepID=F9ZTH5_ACICS
Penicillin-binding protein 2 {ECO:0000313|EMBL:AEK59336.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_S4_scaffold_2_24
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24251..25984)
DNA (1734bp) protein (578aa)
Sulfur oxidation protein SoxB
5''''-nucleotidase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625349
Sulfur oxidation protein SoxB {ECO:0000313|EMBL:AIA55913.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
JSantini_S4_scaffold_2_25
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26041..26370)
DNA (330bp) protein (110aa)
Sulfur oxidation protein SoxZ
sulfur oxidation protein SoxZ n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262534A
Sulfur oxidation protein SoxZ {ECO:0000313|EMBL:AIA55914.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
JSantini_S4_scaffold_2_26
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26417..26923)
DNA (507bp) protein (169aa)
sulfur oxidation protein SoxY
sulfur oxidation protein SoxY n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262534B
Sulfur oxidation protein SoxY {ECO:0000313|EMBL:AIO06861.1}; TaxID=33059 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus.;"
JSantini_S4_scaffold_2_27
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27957..28166
DNA (210bp) protein (70aa)
Thiol:disulfide interchange protein DsbG precursor
Thiol:disulfide interchange protein DsbG n=2 Tax=Acidithiobacillus caldus RepID=F9ZQ00_ACICS
Thiol:disulfide interchange protein DsbG {ECO:0000313|EMBL:AIA55594.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
JSantini_S4_scaffold_2_28
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28192..28512
DNA (321bp) protein (107aa)
Thiol:disulfide interchange protein DsbG precursor
Putative uncharacterized protein n=1 Tax=Acidithiobacillus caldus (strain SM-1) RepID=F9ZM79_ACICS
Thiol:disulfide interchange protein DsbG {ECO:0000313|EMBL:AIA55595.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
JSantini_S4_scaffold_2_trna_1
unknown

Not on your lists

comp(28823..28895)
DNA (73bp)
transferRNA Ala
JSantini_S4_scaffold_2_29
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28973..29731)
DNA (759bp) protein (253aa)
metallo-beta-lactamase family protein
Metallo-beta-lactamase family protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU48_9GAMM
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:CDQ09241.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
Displaying items 1-30 of 166 in total

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