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JSantini_SS8_scaffold_84

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_SS8_scaffold_84_1
unknown

Not on your lists

1..162
DNA (162bp) protein (54aa)
ABC transporter ATP-binding protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026252DD
JSantini_SS8_scaffold_84_2
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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159..1118
DNA (960bp) protein (320aa)
inner-membrane translocator
inner-membrane translocator n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026252DE
Inner-membrane translocator {ECO:0000313|EMBL:ACV59287.1}; Flags: Precursor;; TaxID=521098 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC; 27009 / DSM 446 / JCM 5260 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 /; 104-1A) (Bacillus acidocaldarius).;"
JSantini_SS8_scaffold_84_3

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1215..2693
DNA (1479bp) protein (493aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026252DF
Uncharacterized protein {ECO:0000313|EMBL:CBI04544.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_84_4
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

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2704..3990
DNA (1287bp) protein (429aa)
extracellular solute-binding protein
extracellular solute-binding protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026252E0
ABC transporter periplasmic protein {ECO:0000313|EMBL:KEZ78282.1}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
JSantini_SS8_scaffold_84_5
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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4066..4953
DNA (888bp) protein (296aa)
sugar ABC transporter permease
sugar ABC transporter permease n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026252E1
Sugar ABC transporter, permease protein {ECO:0000313|EMBL:BAK74956.1}; TaxID=748280 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania sp. (strain NH8B).;"
JSantini_SS8_scaffold_84_6
Vibrio vulnificus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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4953..5819
DNA (867bp) protein (289aa)
sugar ABC transporter permease
sugar ABC transporter permease n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026252E2
Sugar ABC transporter permease {ECO:0000313|EMBL:KFK53220.1}; TaxID=672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio vulnificus.;"
JSantini_SS8_scaffold_84_7
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5822..6937
DNA (1116bp) protein (372aa)
multiple sugar transporter ATP-binding protein
sugar ABC transporter ATPase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026252E3
Sugar ABC transporter ATPase {ECO:0000313|EMBL:KHA80622.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
JSantini_SS8_scaffold_84_8
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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6966..8336
DNA (1371bp) protein (457aa)
Arabinose-proton symporter
major facilitator transporter n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026252E4
Arabinose-proton symporter {ECO:0000313|EMBL:AIA56415.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
JSantini_SS8_scaffold_84_9
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8556..9881
DNA (1326bp) protein (442aa)
hypothetical protein
porin n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026252E5
Uncharacterized protein {ECO:0000313|EMBL:AIA56473.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
JSantini_SS8_scaffold_84_10
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9904..10422
DNA (519bp) protein (173aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253C0
Uncharacterized protein {ECO:0000313|EMBL:AIA56474.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
JSantini_SS8_scaffold_84_11
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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10727..12196
DNA (1470bp) protein (490aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253C2
Type II secretion system (T2SS), protein E, N-terminal domain {ECO:0000313|EMBL:KFZ89655.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
JSantini_SS8_scaffold_84_12
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12186..13367
DNA (1182bp) protein (394aa)
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
type II secretion protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253C3
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB {ECO:0000313|EMBL:AEK59432.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_SS8_scaffold_84_13
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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13483..14067
DNA (585bp) protein (195aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253C4
Uncharacterized protein {ECO:0000313|EMBL:CDQ08757.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_84_14
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14130..14786)
DNA (657bp) protein (219aa)
multiple antibiotic resistance (MarC)-like protein
membrane protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253C5
UPF0056 inner membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_SS8_scaffold_84_15
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14895..15155
DNA (261bp) protein (87aa)
hypothetical protein
Regulatory protein, FmdB family n=4 Tax=root RepID=B5EJL2_ACIF5
Uncharacterized protein {ECO:0000313|EMBL:ACK79194.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_SS8_scaffold_84_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15255..17045
DNA (1791bp) protein (597aa)
aspartyl-tRNA synthetase
aspartyl-tRNA synthetase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253C7
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:AEM46385.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_84_17
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17029..17478
DNA (450bp) protein (150aa)
Dihydroneopterin triphosphate pyrophosphohydolase type 2
dihydroneopterin triphosphate pyrophosphatase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253C8
Dihydroneopterin triphosphate pyrophosphohydolase type 2 {ECO:0000313|EMBL:AEK59437.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_SS8_scaffold_84_18
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17524..18621
DNA (1098bp) protein (366aa)
quinolinate synthase A
quinolinate synthetase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253C9
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00569}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00569};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_84_19
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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18630..19244
DNA (615bp) protein (205aa)
phospholipid/glycerol acyltransferase
acyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253CA
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:AEM46383.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_84_20
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19320..20072
DNA (753bp) protein (251aa)
hypothetical protein
transcriptional regulator n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253CB
Probable transcriptional regulatory protein AFERRI_560158 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_84_21
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20099..20599
DNA (501bp) protein (167aa)
ruvC; Holliday junction resolvase (EC:3.1.22.4)
Holliday junction resolvase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253CC
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_SS8_scaffold_84_22

Not on your lists

20621..21202
DNA (582bp) protein (194aa)
ruvA; Holliday junction DNA helicase RuvA
Holliday junction DNA helicase RuvA n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253CD
Holliday junction ATP-dependent DNA helicase ruvA {ECO:0000313|EMBL:CBI05605.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBI05605.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_84_23
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21242..22267
DNA (1026bp) protein (342aa)
Holliday junction ATP-dependent DNA helicase ruvB
Holliday junction DNA helicase RuvB n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253CE
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_84_24

Not on your lists

22257..22679
DNA (423bp) protein (141aa)
ybgC; tol-pal system-associated acyl-CoA thioesterase (EC:3.1.2.-)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253CF
Acyl-CoA thioesterase {ECO:0000313|EMBL:CBI05603.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_84_25
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22686..23387
DNA (702bp) protein (234aa)
protein TolQ
protein tolQ n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253D0
Protein TolQ {ECO:0000313|EMBL:AEM46377.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_84_26
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23402..23794
DNA (393bp) protein (131aa)
protein TolR
biopolymer transporter TolR n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253D1
Protein TolR {ECO:0000313|EMBL:CDQ11603.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_84_27

Not on your lists

23791..24831
DNA (1041bp) protein (347aa)
protein TolA
membrane protein TolA n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253D2
Membrane anchored protein in TolA-TolQ-TolR complex {ECO:0000313|EMBL:CBI05622.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_84_28
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24824..26092
DNA (1269bp) protein (423aa)
tolB; tol-pal system beta propeller repeat protein TolB
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253D3
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_SS8_scaffold_84_29
unknown

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26144..26413
DNA (270bp) protein (90aa)

This feature has no annotations

Displaying 29 items

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