ggKbase home page

JSantini_SS8_scaffold_115

Search features with annotation key words

Displaying 22 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_SS8_scaffold_115_1
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

264..1706
DNA (1443bp) protein (481aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BYM5_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL22676.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
JSantini_SS8_scaffold_115_2
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2167..3021
DNA (855bp) protein (285aa)
family 2 glycosyl transferase
Glycosyl transferase family 2 n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MDW0_ACIET
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACM32214.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
JSantini_SS8_scaffold_115_3
Desulfobulbus propionicus, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2972..4201
DNA (1230bp) protein (410aa)
hypothetical protein
Outer membrane protein-like protein n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8REM8_DESPD
Outer membrane protein-like protein {ECO:0000313|EMBL:ADW18104.1}; TaxID=577650 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3).;"
JSantini_SS8_scaffold_115_4
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4180..5187
DNA (1008bp) protein (336aa)
hypothetical protein
Outer membrane protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BYM7_9BURK
Outer membrane protein {ECO:0000313|EMBL:EHL22678.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
JSantini_SS8_scaffold_115_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5231..6190
DNA (960bp) protein (320aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Comamonas testosteroni S44 RepID=D8DAG5_COMTE
Uncharacterized protein {ECO:0000313|EMBL:KGH00915.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
JSantini_SS8_scaffold_115_6
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6211..7149
DNA (939bp) protein (313aa)
UDP-glucose 4-epimerase
UDP-glucose 4-epimerase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625419
UDP-glucose 4-epimerase {ECO:0000313|EMBL:AEK56701.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
JSantini_SS8_scaffold_115_7
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7255..7458)
DNA (204bp) protein (68aa)
cold-shock DNA-binding domain-containing protein
cold-shock protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262541A
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:AEM46325.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_115_8
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7649..8530
DNA (882bp) protein (294aa)
3-hydroxyisobutyrate dehydrogenase
oxidoreductase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253E2
3-hydroxyisobutyrate dehydrogenase family protein {ECO:0000313|EMBL:ACK79113.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_SS8_scaffold_115_9
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8561..10828
DNA (2268bp) protein (756aa)
oxidoreductase molybdopterin subunit
oxidoreductase alpha (molybdopterin) subunit n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253E1
Oxidoreductase alpha (Molybdopterin) subunit {ECO:0000313|EMBL:ACK80458.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_SS8_scaffold_115_10
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10818..11087
DNA (270bp) protein (90aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253E0
Uncharacterized protein {ECO:0000313|EMBL:ACH83584.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_SS8_scaffold_115_11
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11066..11911
DNA (846bp) protein (282aa)
fdhD-1; formate dehydrogenase family accessory protein FdhD
formate dehydrogenase accessory protein FdhD n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253DF
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187, ECO:0000256|SAAS:SAAS00093832}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_SS8_scaffold_115_12
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11956..13065
DNA (1110bp) protein (370aa)
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
alcohol dehydrogenase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253DE
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_115_13
Nostoc sp. PCC 7120, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

13074..13943
DNA (870bp) protein (290aa)
aroE; S-formylglutathione hydrolase
S-formylglutathione hydrolase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253DD
S-formylglutathione hydrolase {ECO:0000313|EMBL:BAB74507.1}; TaxID=103690 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain PCC 7120 / UTEX 2576).;"
JSantini_SS8_scaffold_115_14
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13997..15313
DNA (1317bp) protein (439aa)
major facilitator family transporter
MFS transporter n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253DC
General substrate transporter {ECO:0000313|EMBL:ACH85078.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_SS8_scaffold_115_15
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15316..16023)
DNA (708bp) protein (236aa)
TonB family protein
cell envelope biogenesis protein TonB n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253DB
TonB family protein {ECO:0000313|EMBL:AEM49313.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_115_16

Not on your lists

comp(16011..17003)
DNA (993bp) protein (331aa)
hemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
delta-aminolevulinic acid dehydratase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253DA
Delta-aminolevulinic acid dehydratase (Porphobilinogen synthase) {ECO:0000313|EMBL:CBI06482.1}; EC=4.2.1.24 {ECO:0000313|EMBL:CBI06482.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_115_17
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16996..17793)
DNA (798bp) protein (266aa)
uroporphyrinogen III synthase HEM4
uroporphyrinogen III synthase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253D9
Uroporphyrinogen III synthase HEM4 {ECO:0000313|EMBL:AEM49315.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_115_18
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17790..18707)
DNA (918bp) protein (306aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
porphobilinogen deaminase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253D8
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_115_19
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18875..19453
DNA (579bp) protein (193aa)
peptidoglycan-associated lipoprotein
peptidoglycan-binding protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253D7
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:AEM46370.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_115_20

Not on your lists

19475..20299
DNA (825bp) protein (275aa)
hypothetical protein
tol-pal system protein YbgF n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253D6
Uncharacterized protein {ECO:0000313|EMBL:CBI05618.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_115_21
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20302..20946
DNA (645bp) protein (215aa)
radical SAM domain-containing protein
7-carboxy-7-deazaguanine synthase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253D5
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_115_22
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20947..21639
DNA (693bp) protein (231aa)
exsB protein
7-cyano-7-deazaguanine synthase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026253D4
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
Displaying 22 items

View Taxonomy