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JSantini_SS8_scaffold_318

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_SS8_scaffold_318_1
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5..376)
DNA (372bp) protein (124aa)
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D48
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_318_2
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(406..1422)
DNA (1017bp) protein (339aa)
DNA-directed RNA polymerase subunit alpha
DNA-directed RNA polymerase subunit alpha n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D47
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_318_3
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1445..2071)
DNA (627bp) protein (209aa)
30S ribosomal protein S4
30S ribosomal protein S4 n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JRB5_9GAMM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_318_4
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2092..2487)
DNA (396bp) protein (132aa)
30S ribosomal protein S11
30S ribosomal protein S11 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FCE
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_318_5
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2505..2861)
DNA (357bp) protein (119aa)
30S ribosomal protein S13
30S ribosomal protein S13 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FCF
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_318_6
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3044..3262)
DNA (219bp) protein (73aa)
translation initiation factor IF-1
Translation initiation factor IF-1 n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JRB9_9GAMM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_318_7

Not on your lists

comp(3263..3925)
DNA (663bp) protein (221aa)
Nucleoside-triphosphate--adenylate kinase (EC:2.7.4.10)
adenylate kinase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FD0
Adenylate kinase (ATP-AMP transphosphorylase) (AK) {ECO:0000313|EMBL:CBI06539.1}; EC=2.7.4.3 {ECO:0000313|EMBL:CBI06539.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_318_8
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3922..5253)
DNA (1332bp) protein (444aa)
preprotein translocase subunit SecY
preprotein translocase subunit SecY n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FD1
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_318_9
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5253..5690)
DNA (438bp) protein (146aa)
50S ribosomal protein L15
50S ribosomal protein L15 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FD2
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_318_10
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5687..5872)
DNA (186bp) protein (62aa)
rpmD; 50S ribosomal protein L30
50S ribosomal protein L30 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FD3
50S ribosomal protein L30 {ECO:0000255|HAMAP-Rule:MF_01371}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_SS8_scaffold_318_11
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5865..6395)
DNA (531bp) protein (177aa)
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262508F
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_SS8_scaffold_318_12
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6410..6763)
DNA (354bp) protein (118aa)
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625090
50S ribosomal protein L18 {ECO:0000255|HAMAP-Rule:MF_01337}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_SS8_scaffold_318_13

Not on your lists


comp(6782..7306)
DNA (525bp) protein (175aa)
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625091
50S ribosomal protein L6 {ECO:0000313|EMBL:CBI06521.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_318_14
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7319..7714)
DNA (396bp) protein (132aa)
30S ribosomal protein S8
30S ribosomal protein S8 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625092
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_318_15
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7924..8466)
DNA (543bp) protein (181aa)
50S ribosomal protein L5
50S ribosomal protein L5 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625094
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_SS8_scaffold_318_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8481..8801)
DNA (321bp) protein (107aa)
50S ribosomal protein L24
50S ribosomal protein L24 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625095
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_318_17
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8811..9179)
DNA (369bp) protein (123aa)
50S ribosomal protein L14
50S ribosomal protein L14 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625096
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_318_18
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9176..9451)
DNA (276bp) protein (92aa)
30S ribosomal protein S17
30S ribosomal protein S17 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625097
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_318_19
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9451..9645)
DNA (195bp) protein (65aa)
50S ribosomal protein L29
50S ribosomal protein L29 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625098
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_318_20

Not on your lists


comp(9642..10058)
DNA (417bp) protein (139aa)
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625099
50S ribosomal subunit protein L16 {ECO:0000313|EMBL:CBI06527.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_318_21
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10071..10733)
DNA (663bp) protein (221aa)
30S ribosomal protein S3
30S ribosomal protein S3 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262509A
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_318_22
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10745..11044)
DNA (300bp) protein (100aa)
50S ribosomal protein L22
50S ribosomal protein L22 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262509B
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_318_23
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11089..11364)
DNA (276bp) protein (92aa)
30S ribosomal protein S19
30S ribosomal protein S19 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262509C
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_318_24
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11383..11565)
DNA (183bp) protein (61aa)
rplB; 50S ribosomal protein L2
50S ribosomal protein L2 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262509D
50S ribosomal protein L2 {ECO:0000255|HAMAP-Rule:MF_01320}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
Displaying 24 items

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