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JSantini_SS8_scaffold_508

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_SS8_scaffold_508_1

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1..741
DNA (741bp) protein (247aa)
transposase
hypothetical protein, partial n=2 Tax=Acidithiobacillus thiooxidans RepID=UPI00026249CF
Uncharacterized protein {ECO:0000313|EMBL:CBI05398.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_508_2
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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878..1135
DNA (258bp) protein (86aa)
regulatory protein LuxR
ISBmu8 transposase n=1 Tax=Burkholderia fungorum RepID=R4UPK4_9BURK
ISBmu8 transposase {ECO:0000313|EMBL:AGM34779.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
JSantini_SS8_scaffold_508_3
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1112..1753)
DNA (642bp) protein (214aa)
Conjugal transfer protein traB
TraB n=1 Tax=Acidiphilium sp. PM RepID=F7S9B1_9PROT
TraB {ECO:0000313|EMBL:EGO94280.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
JSantini_SS8_scaffold_508_4
unknown

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2707..3483
DNA (777bp) protein (259aa)

This feature has no annotations

JSantini_SS8_scaffold_508_5
unknown

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3480..4067
DNA (588bp) protein (196aa)

This feature has no annotations

JSantini_SS8_scaffold_508_6
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4064..4453
DNA (390bp) protein (130aa)
mobilisation protein
Mobilisation protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X3W4_THIK1
Mobilisation protein {ECO:0000313|EMBL:ADG31551.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
JSantini_SS8_scaffold_508_7
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4446..6824
DNA (2379bp) protein (793aa)
Relaxase/mobilization nuclease family protein
Relaxase/mobilization nuclease topoisomerase/primase fusion protein n=1 Tax=Salmonella enterica subsp. enterica serovar Westhampton RepID=B7NZZ4_SALET
Relaxase/mobilization nuclease topoisomerase/primase fusion protein {ECO:0000313|EMBL:ACJ65155.1}; TaxID=356621 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Westhampton.;"
JSantini_SS8_scaffold_508_8
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6871..7854)
DNA (984bp) protein (328aa)
phage integrase
Putative phage integrase n=1 Tax=Acidithiobacillus caldus (strain SM-1) RepID=F9ZL87_ACICS
Integrase family protein {ECO:0000313|EMBL:CDQ09662.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_508_trna_1
unknown

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comp(7949..8030)
DNA (82bp)
transferRNA Leu
JSantini_SS8_scaffold_508_9
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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8086..8280
DNA (195bp) protein (65aa)
hypothetical protein
nucleotidyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F8B
Uncharacterized protein {ECO:0000313|EMBL:ACH84088.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_SS8_scaffold_508_10
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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8280..8498
DNA (219bp) protein (73aa)
hypothetical protein
nucleotidyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F8B
Uncharacterized protein {ECO:0000313|EMBL:ACH84088.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_SS8_scaffold_508_11
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8540..9460)
DNA (921bp) protein (307aa)
hypothetical protein
membrane protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F8C
Putative uncharacterized protein {ECO:0000313|EMBL:AEM48671.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_508_12
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9550..10623)
DNA (1074bp) protein (358aa)
FAD/FMN-binding oxidoreductase
oxidoreductase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F8D
Oxidoreductase, FAD/FMN-binding {ECO:0000313|EMBL:ACK78811.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_SS8_scaffold_508_13
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10620..11147)
DNA (528bp) protein (176aa)
dienelactone hydrolase
carboxymethylenebutenolidase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F8E
Dienelactone hydrolase {ECO:0000313|EMBL:AEM47366.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_508_14
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11242..11814)
DNA (573bp) protein (191aa)
TetR family transcriptional regulator
TetR family transcriptional regulator n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F8F
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACH84085.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_SS8_scaffold_508_15
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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11933..13168
DNA (1236bp) protein (412aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F90
Uncharacterized protein {ECO:0000313|EMBL:CDQ11322.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_508_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13170..13997)
DNA (828bp) protein (276aa)
nicotinate-nucleotide pyrophosphorylase
nicotinate-nucleotide pyrophosphorylase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F91
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:AEM47368.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_508_17
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13994..15361)
DNA (1368bp) protein (456aa)
Na(+)/H(+) antiporter nhaA
sodium:proton antiporter n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F92
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_508_18

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comp(15364..16869)
DNA (1506bp) protein (502aa)
valyl-tRNA synthetase
valyl-tRNA synthetase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F93
Valyl-tRNA synthetase {ECO:0000313|EMBL:CBI03754.1}; EC=6.1.1.9 {ECO:0000313|EMBL:CBI03754.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_508_19
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16832..17152)
DNA (321bp) protein (107aa)
Valyl-tRNA synthetase
valyl-tRNA synthetase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624F93
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
Valyl tRNA synthetase suspected. See adjacent gene [JSantini_SS8_scaffold_508_18].
Displaying 20 items

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