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JSantini_SS8_scaffold_546

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_SS8_scaffold_546_1
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..623)
DNA (621bp) protein (207aa)
metX; homoserine O-acetyltransferase (EC:2.3.1.31)
homoserine O-acetyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C74
Homoserine O-acetyltransferase {ECO:0000255|HAMAP-Rule:MF_00296}; EC=2.3.1.31 {ECO:0000255|HAMAP-Rule:MF_00296};; Homoserine O-trans-acetylase {ECO:0000255|HAMAP-Rule:MF_00296}; Short=HTA {ECO:0000255|HAMAP-Rule:MF_00296};; Short=Homoserine transacetylase {ECO:0000255|HAMAP-Rule:MF_00296};; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_SS8_scaffold_546_2

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917..1510
DNA (594bp) protein (198aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C75
Uncharacterized protein {ECO:0000313|EMBL:CBI06466.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_546_3

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1616..2860
DNA (1245bp) protein (415aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
serine hydroxymethyltransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C76
Serine hydroxymethyltransferase (Serine methylase) (SHMT) {ECO:0000313|EMBL:CBI06467.1}; EC=2.1.2.1 {ECO:0000313|EMBL:CBI06467.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_546_4
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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2833..3369
DNA (537bp) protein (179aa)
transcriptional repressor nrdR
NrdR family transcriptional regulator n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C77
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_546_5

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3386..4459
DNA (1074bp) protein (358aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
diaminohydroxyphosphoribosylaminopyrimidine deaminase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C78
Fused diaminohydroxyphosphoribosylaminopyrimidine deaminase5-amino-6-(5-phosphoribosylamino) uracil reductase {ECO:0000313|EMBL:CBI06469.1}; EC=1.1.1.193 {ECO:0000313|EMBL:CBI06469.1};; EC=3.5.4.26 {ECO:0000313|EMBL:CBI06469.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_546_6
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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4463..5119
DNA (657bp) protein (219aa)
riboflavin synthase subunit alpha
riboflavin synthase subunit alpha n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C79
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:AEM48810.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_546_7
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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5116..6237
DNA (1122bp) protein (374aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C7A
Riboflavin biosynthesis protein ribAB {ECO:0000313|EMBL:CDQ10765.1}; EC=4.1.99.12 {ECO:0000313|EMBL:CDQ10765.1};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_546_8
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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6247..6711
DNA (465bp) protein (155aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C7B
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
JSantini_SS8_scaffold_546_9
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6718..7164
DNA (447bp) protein (149aa)
NusB antitermination factor
transcriptional antiterminator NusG n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624C7C
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_546_10
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7277..7852
DNA (576bp) protein (192aa)
Sel1 domain-containing protein repeat-containing protein
Sel1 domain protein repeat-containing protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JRV1_9GAMM
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:AEM48805.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_546_11
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7875..8219)
DNA (345bp) protein (115aa)
hypothetical protein
hypothetical protein, partial n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624B6A
Putative uncharacterized protein {ECO:0000313|EMBL:AEM48804.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_546_12
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8324..9727)
DNA (1404bp) protein (468aa)
2-polyprenylphenol 6-hydroxylase
ubiquinone biosynthesis protein UbiB n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026250A4
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_546_13
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9829..10473)
DNA (645bp) protein (215aa)
OmpA family protein
membrane protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026250A3
OmpA/MotB domain protein {ECO:0000313|EMBL:CDQ10758.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_546_14
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10721..11044)
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=uncultured gamma proteobacterium HF0010_01E20 RepID=E0XQ80_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDH45353.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
JSantini_SS8_scaffold_546_trna_1
unknown

Not on your lists

10729..10810
DNA (82bp)
transferRNA Tyr
JSantini_SS8_scaffold_546_trna_2
unknown

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10874..10944
DNA (71bp)
transferRNA Gly
JSantini_SS8_scaffold_546_trna_3
unknown

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10955..11027
DNA (73bp)
transferRNA Thr
Displaying 17 items

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