ggKbase home page

JSantini_SS8_scaffold_743

Search features with annotation key words

Displaying 15 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_SS8_scaffold_743_1
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1092)
DNA (1092bp) protein (364aa)
A/G-specific adenine glycosylase
adenine glycosylase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E13
A/G-specific adenine glycosylase {ECO:0000313|EMBL:AEM48968.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_743_2
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1089..2192)
DNA (1104bp) protein (368aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E14
Putative uncharacterized protein {ECO:0000313|EMBL:AEM48969.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_743_3
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2200..3912)
DNA (1713bp) protein (571aa)
phosphoenolpyruvate-protein phosphotransferase
phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E15
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_743_4

Not on your lists

comp(3909..4181)
DNA (273bp) protein (91aa)
ptsH; phosphocarrier protein HPr
phosphocarrier protein HPr n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E16
Phosphocarrier protein HPr (Histidine-containing protein) (Protein H) {ECO:0000313|EMBL:CBI05778.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_743_5
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4312..4719)
DNA (408bp) protein (136aa)
PTS system fructose subfamily transporter subunit IIA
PTS sugar transporter subunit IIA n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E17
PTS system fructose subfamily IIA component {ECO:0000313|EMBL:ACH84822.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_SS8_scaffold_743_6

Not on your lists

comp(4716..5615)
DNA (900bp) protein (300aa)
ATPase
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E18
Putative P-loop-containing kinase {ECO:0000313|EMBL:CBI05780.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_SS8_scaffold_743_7
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5615..6547)
DNA (933bp) protein (311aa)
HPr kinase
HPr kinase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E19
HPr kinase/phosphorylase {ECO:0000256|SAAS:SAAS00058411}; EC=2.7.11.- {ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|SAAS:SAAS00058435};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_SS8_scaffold_743_8
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6568..7014)
DNA (447bp) protein (149aa)
PTS system sugar transporter subunit IIA
PTS sugar transporter n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E1A
Phosphoenolpyruvate-dependent sugar PTS system, EIIA component {ECO:0000313|EMBL:ACK77900.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_SS8_scaffold_743_9
unknown

Not on your lists

comp(7011..7160)
DNA (150bp) protein (50aa)

This feature has no annotations

JSantini_SS8_scaffold_743_10
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7277..8710)
DNA (1434bp) protein (478aa)
RNA polymerase sigma-54 subunit RpoN
RNA polymerase factor sigma-54 n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E1C
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_743_11
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8723..9448)
DNA (726bp) protein (242aa)
ABC transporter
lipopolysaccharide ABC transporter ATP-binding protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E1D
Putative sulfate transporting ATPase {ECO:0000313|EMBL:CDQ08643.1}; EC=3.6.3.25 {ECO:0000313|EMBL:CDQ08643.1};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_743_12
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9445..9990)
DNA (546bp) protein (182aa)
hypothetical protein
sugar ABC transporter substrate-binding protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E1E
Lipopolysaccharide export system protein LptA {ECO:0000256|HAMAP-Rule:MF_01914}; Flags: Precursor;; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_SS8_scaffold_743_13
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9965..10519)
DNA (555bp) protein (185aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E1F
Uncharacterized protein {ECO:0000313|EMBL:CDQ08641.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_743_14
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10519..11070)
DNA (552bp) protein (184aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
HAD family hydrolase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E20
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase {ECO:0000313|EMBL:CDQ08640.1}; EC=3.1.3.45 {ECO:0000313|EMBL:CDQ08640.1};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_SS8_scaffold_743_15
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11067..11192)
DNA (126bp) protein (42aa)
KpsF/GutQ family protein
D-arabinose 5-phosphate isomerase n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624E21
Arabinose 5-phosphate isomerase {ECO:0000256|PIRNR:PIRNR004692}; Short=API {ECO:0000256|PIRNR:PIRNR004692};; EC=5.3.1.13 {ECO:0000256|PIRNR:PIRNR004692};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
Displaying 15 items

View Taxonomy