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L1_007_000G1_scaffold_19

Search features with annotation key words

Displaying items 1-30 of 301 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_19_1
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..429)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6U195_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC79438.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
Site-specific recombinase XerC
L1_007_000G1_scaffold_19_2
Clostridium sp. CAG:433, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(871..2343)
DNA (1473bp) protein (491aa)
Site-specific recombinase for integration and excision n=1 Tax=Clostridium sp. CAG:433 RepID=R6Y5T9_9CLOT
Site-specific recombinase for integration and excision {ECO:0000313|EMBL:CDD29255.1}; TaxID=1262806 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:433.;"
hypothetical protein
L1_007_000G1_scaffold_19_3
unknown

Not on your lists

comp(2340..2483)
DNA (144bp) protein (48aa)

This feature has no annotations

L1_007_000G1_scaffold_19_4
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2735..3583
DNA (849bp) protein (283aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KUE0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN36452.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
ferrous iron transport B domain-containing protein
L1_007_000G1_scaffold_19_5
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3629..4753
DNA (1125bp) protein (375aa)
Peptidase, M23 family n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NB99_CLOSV
Peptidase, M23 family {ECO:0000313|EMBL:EDS08407.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Membrane proteins related to metalloendopeptidases
L1_007_000G1_scaffold_19_6
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4757..4936)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NB98_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS08406.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L1_007_000G1_scaffold_19_7
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5072..5464
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NB97_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36449.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
L1_007_000G1_scaffold_19_8
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5547..6221)
DNA (675bp) protein (225aa)
Mg2+ transporter-C family protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NB94_CLOSV
Mg2+ transporter-C family protein {ECO:0000313|EMBL:EDS08402.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
cadA; Cation transport ATPase, MgtC/SapB family
L1_007_000G1_scaffold_19_9
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6413..7195
DNA (783bp) protein (261aa)
Uridine phosphorylase {ECO:0000256|RuleBase:RU361131}; EC=2.4.2.3 {ECO:0000256|RuleBase:RU361131};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
uridine phosphorylase (EC:2.4.2.3)
Uridine phosphorylase n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NB92_CLOSV
L1_007_000G1_scaffold_19_10
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7209..7907
DNA (699bp) protein (233aa)
Purine nucleoside phosphorylase DeoD-type {ECO:0000256|HAMAP-Rule:MF_01627}; Short=PNP {ECO:0000256|HAMAP-Rule:MF_01627};; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01627};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Purine nucleoside phosphorylase DeoD-type n=2 Tax=Clostridiales RepID=B0NB91_CLOSV
deoD; purine nucleoside phosphorylase
L1_007_000G1_scaffold_19_11
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7937..8599
DNA (663bp) protein (221aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NB90_CLOSV
L1_007_000G1_scaffold_19_12
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8596..9048
DNA (453bp) protein (151aa)
Cytidine deaminase {ECO:0000313|EMBL:EDS08397.1}; EC=3.5.4.5 {ECO:0000313|EMBL:EDS08397.1};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Cytidine deaminase n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NB89_CLOSV
cytidine deaminase
L1_007_000G1_scaffold_19_13
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9115..10203
DNA (1089bp) protein (363aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KUD1_9FIRM
L1_007_000G1_scaffold_19_14
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10277..11947
DNA (1671bp) protein (557aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=2 Tax=Clostridiales RepID=B0NB87_CLOSV
L1_007_000G1_scaffold_19_15
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11971..13650
DNA (1680bp) protein (560aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NB86_CLOSV
L1_007_000G1_scaffold_19_16
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13678..14760
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=2 Tax=Clostridiales RepID=B0NB85_CLOSV
L1_007_000G1_scaffold_19_17
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14763..15926
DNA (1164bp) protein (388aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EDS08392.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EDS08392.1};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
4-phosphoerythronate dehydrogenase n=2 Tax=Clostridiales RepID=B0NB84_CLOSV
L1_007_000G1_scaffold_19_18
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16060..17502
DNA (1443bp) protein (481aa)
Polysaccharide deacetylase n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NB83_CLOSV
Polysaccharide deacetylase {ECO:0000313|EMBL:EDS08391.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Predicted xylanase/chitin deacetylase
L1_007_000G1_scaffold_19_19
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17846..19021)
DNA (1176bp) protein (392aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=2 Tax=Clostridiales RepID=B0NB81_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36435.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
L1_007_000G1_scaffold_19_20
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19176..20504
DNA (1329bp) protein (443aa)
GTPase Der n=2 Tax=Clostridiales RepID=B0NB80_CLOSV
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
ribosome-associated GTPase EngA
L1_007_000G1_scaffold_19_21
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20507..21148
DNA (642bp) protein (214aa)
Glycerol-3-phosphate acyltransferase n=2 Tax=Clostridiales RepID=B0NB79_CLOSV
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
acyl-phosphate glycerol-3-phosphate acyltransferase
L1_007_000G1_scaffold_19_22
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21177..22190
DNA (1014bp) protein (338aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
glycerol 3-phosphate dehydrogenase (NAD(P)+) (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=2 Tax=Clostridiales RepID=B0NB78_CLOSV
L1_007_000G1_scaffold_19_23
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22274..23161)
DNA (888bp) protein (296aa)
LysR substrate binding domain protein n=2 Tax=Clostridiales RepID=B0NB77_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36431.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
LysR family transcriptional regulator
L1_007_000G1_scaffold_19_24
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23360..24199
DNA (840bp) protein (280aa)
AP endonuclease, family 2 n=2 Tax=Clostridiales RepID=B0NB75_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36430.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_000G1_scaffold_19_25
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24264..26189
DNA (1926bp) protein (642aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KUC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN36429.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
NADH:flavin oxidoreductases, Old Yellow Enzyme family
L1_007_000G1_scaffold_19_26
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26207..27082
DNA (876bp) protein (292aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=2 Tax=Clostridiales RepID=B0NB73_CLOSV
L1_007_000G1_scaffold_19_27
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27125..28402
DNA (1278bp) protein (426aa)
Transporter, major facilitator family protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NB72_CLOSV
Transporter, major facilitator family protein {ECO:0000313|EMBL:EDS08380.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L1_007_000G1_scaffold_19_28
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28501..29949
DNA (1449bp) protein (483aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NB71_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36426.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_000G1_scaffold_19_29
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29960..30721)
DNA (762bp) protein (254aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
3-dehydroquinate dehydratase, type I (EC:4.2.1.10)
3-dehydroquinate dehydratase n=2 Tax=Clostridiales RepID=B0NB70_CLOSV
L1_007_000G1_scaffold_19_30
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30901..32373
DNA (1473bp) protein (491aa)
Stage IV sporulation protein A n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NB69_CLOSV
Stage IV sporulation protein A {ECO:0000313|EMBL:EDS08377.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
stage IV sporulation protein A
Displaying items 1-30 of 301 in total

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