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L1_007_000G1_scaffold_190

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Displaying items 1-30 of 132 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_190_1
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..167)
DNA (165bp) protein (55aa)
UPF0102 protein CLOSCI_01330 n=2 Tax=Clostridiales RepID=B0ND03_CLOSV
UPF0102 protein HMPREF0993_02485 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_000G1_scaffold_190_2
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(186..845)
DNA (660bp) protein (220aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=2 Tax=Clostridiales RepID=B0ND02_CLOSV
L1_007_000G1_scaffold_190_3
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(838..1416)
DNA (579bp) protein (193aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=2 Tax=Clostridiales RepID=B0ND01_CLOSV
L1_007_000G1_scaffold_190_4
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1446..2294)
DNA (849bp) protein (283aa)
Ribosome biogenesis GTPase A n=2 Tax=Clostridiales RepID=B0ND00_CLOSV
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
ribosome biogenesis GTP-binding protein YlqF
L1_007_000G1_scaffold_190_5
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2306..2899)
DNA (594bp) protein (198aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
Signal peptidase I n=2 Tax=Clostridiales RepID=B0NCZ9_CLOSV
signal peptidase I
L1_007_000G1_scaffold_190_6
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2964..3311)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=2 Tax=Clostridiales RepID=B0NCZ8_CLOSV
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
ribosomal protein L19, bacterial type
L1_007_000G1_scaffold_190_7
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3407..4141)
DNA (735bp) protein (245aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Clostridiales RepID=B0NCZ7_CLOSV
L1_007_000G1_scaffold_190_8
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4189..4695)
DNA (507bp) protein (169aa)
Ribosome maturation factor RimM n=2 Tax=Clostridiales RepID=B0NCZ6_CLOSV
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
rimM; 16S rRNA-processing protein RimM
L1_007_000G1_scaffold_190_9
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4764..4994)
DNA (231bp) protein (77aa)
UPF0109 protein CLOSCI_01322 n=2 Tax=Clostridiales RepID=B0NCZ5_CLOSV
UPF0109 protein HMPREF0993_02493 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
RNA-binding protein (KH domain)
L1_007_000G1_scaffold_190_10
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5019..5264)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=2 Tax=Clostridiales RepID=B0NCZ4_CLOSV
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
SSU ribosomal protein S16P
L1_007_000G1_scaffold_190_11
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5330..6679)
DNA (1350bp) protein (450aa)
Signal recognition particle protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NCZ3_CLOSV
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
signal recognition particle protein
L1_007_000G1_scaffold_190_12
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6681..7025)
DNA (345bp) protein (115aa)
Helix-turn-helix protein, YlxM/p13 family n=2 Tax=Clostridiales RepID=B0NCZ2_CLOSV
UPF0122 protein CLOSCI_01319 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L1_007_000G1_scaffold_190_13
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7246..8139)
DNA (894bp) protein (298aa)
Peptidase, S8/S53 family n=2 Tax=Clostridiales RepID=B0NCZ1_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36859.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
peptidase S8 and S53 subtilisin kexin sedolisin
L1_007_000G1_scaffold_190_14
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8159..8869)
DNA (711bp) protein (237aa)
Response regulator receiver domain protein n=2 Tax=Clostridiales RepID=B0NCZ0_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36860.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
KDP operon transcriptional regulatory protein KdpE
L1_007_000G1_scaffold_190_15
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8866..11556)
DNA (2691bp) protein (897aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NCY9_CLOSV
hypothetical protein
L1_007_000G1_scaffold_190_16
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11576..12181)
DNA (606bp) protein (202aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
kdpC; potassium-transporting ATPase subunit C (EC:3.6.3.12)
Potassium-transporting ATPase C chain n=2 Tax=Clostridiales RepID=B0NCY8_CLOSV
L1_007_000G1_scaffold_190_17
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12205..14277)
DNA (2073bp) protein (691aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
kdpB; potassium-transporting ATPase subunit B (EC:3.6.3.12)
Potassium-transporting ATPase B chain n=2 Tax=Clostridiales RepID=B0NCY7_CLOSV
L1_007_000G1_scaffold_190_18
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14290..16032)
DNA (1743bp) protein (581aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
kdpA; potassium-transporting ATPase subunit A (EC:3.6.3.12)
Potassium-transporting ATPase A chain n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KU57_9FIRM
L1_007_000G1_scaffold_190_19
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16083..16487)
DNA (405bp) protein (135aa)
Tetratricopeptide repeat protein n=2 Tax=Clostridiales RepID=B0NCY5_CLOSV
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EDS07503.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L1_007_000G1_scaffold_190_20
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16685..17320
DNA (636bp) protein (212aa)
DnaJ domain protein n=2 Tax=Clostridiales RepID=B0NCY4_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36866.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L1_007_000G1_scaffold_190_21
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17393..17653
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NCY3_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36867.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_000G1_scaffold_190_22
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17726..17869)
DNA (144bp) protein (48aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KU75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN36868.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_000G1_scaffold_190_23
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18000..18497
DNA (498bp) protein (166aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NCY0_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36869.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
L1_007_000G1_scaffold_190_24
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18490..18774
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NCX9_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36870.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_000G1_scaffold_190_25
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18868..19344)
DNA (477bp) protein (159aa)
Thioesterase family protein n=2 Tax=Clostridiales RepID=B0NCX8_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36871.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
thioesterase superfamily protein
L1_007_000G1_scaffold_190_26
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19341..19835)
DNA (495bp) protein (165aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NCX7_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36872.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_000G1_scaffold_190_27
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19995..20732
DNA (738bp) protein (246aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=2 Tax=Clostridiales RepID=B0NCX6_CLOSV
L1_007_000G1_scaffold_190_28
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20829..21578)
DNA (750bp) protein (250aa)
Transcriptional regulator, DeoR family n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NCX5_CLOSV
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EDS07493.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
DeoR family transcriptional regulator
L1_007_000G1_scaffold_190_29
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21649..23052)
DNA (1404bp) protein (468aa)
Transporter, gluconate:H+ symporter family n=2 Tax=Clostridiales RepID=B0NCX4_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN36876.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
gluconate transporter
L1_007_000G1_scaffold_190_30
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23082..24080)
DNA (999bp) protein (333aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=2 Tax=Clostridiales RepID=B0NCX3_CLOSV
Displaying items 1-30 of 132 in total

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