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L1_007_000G1_scaffold_197

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_197_1
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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410..1489
DNA (1080bp) protein (360aa)
HTH-type transcriptional repressor PurR n=1 Tax=Clostridium sp. D5 RepID=F0YW46_9CLOT
HTH-type transcriptional repressor PurR {ECO:0000313|EMBL:EGB93884.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
transcriptional repressor of the ribose operon
L1_007_000G1_scaffold_197_2
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

Not on your lists

2149..2508
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI0003734F32
hypothetical protein
Tax=RBG_13_Actinobacteria_35_12_curated
L1_007_000G1_scaffold_197_3
Peptoniphilus sp. BV3C26, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2598..3623
DNA (1026bp) protein (342aa)
periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Treponema primitia RepID=UPI0002554EA9
Periplasmic-binding protein domain protein {ECO:0000313|EMBL:ERT61515.1}; TaxID=1111134 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. BV3C26.;"
periplasmic binding protein/LacI transcriptional regulator
L1_007_000G1_scaffold_197_4
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3742..5226
DNA (1485bp) protein (495aa)
ABC-type sugar transport system, ATPase component (EC:3.6.3.17)
D-ribose transporter ATP binding protein n=1 Tax=Treponema primitia RepID=UPI0002554EAA
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDS13230.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L1_007_000G1_scaffold_197_5
Cohnella sp. VKM B-2846, Cohnella, Bacillales, Bacilli, Firmicutes, Bacteria

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5243..6238
DNA (996bp) protein (332aa)
ribose ABC transporter permease n=1 Tax=Treponema primitia RepID=UPI0002554EAB
Sugar ABC transporter permease {ECO:0000313|EMBL:KIL35486.1}; TaxID=1590652 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Cohnella.;" source="Cohnella sp. VKM B-2846.;"
ribose ABC transporter permease
L1_007_000G1_scaffold_197_6
Bacillus okhensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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6249..7205
DNA (957bp) protein (319aa)
inner-membrane translocator n=1 Tax=Treponema primitia RepID=UPI0002554EAC
Uncharacterized protein {ECO:0000313|EMBL:KHF41608.1}; TaxID=333138 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus okhensis.;"
rbsC; ribose ABC transporter permease
L1_007_000G1_scaffold_197_7
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7247..8596
DNA (1350bp) protein (450aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YXU0_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93042.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_000G1_scaffold_197_8
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8619..9923
DNA (1305bp) protein (435aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YW53_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93891.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_000G1_scaffold_197_9
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10050..11567
DNA (1518bp) protein (506aa)
Carbohydrate kinase, FGGY family n=1 Tax=Clostridium sp. D5 RepID=F0YW54_9CLOT
Carbohydrate kinase, FGGY family {ECO:0000313|EMBL:EGB93892.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
carbohydrate kinase FGGY
L1_007_000G1_scaffold_197_10
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11997..12485
DNA (489bp) protein (163aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YW56_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93894.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_000G1_scaffold_197_11
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12476..12892
DNA (417bp) protein (139aa)
Phosphocarrier, HPr family n=1 Tax=Clostridium sp. D5 RepID=F0YW57_9CLOT
Phosphocarrier, HPr family {ECO:0000313|EMBL:EGB93895.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
PTS system phosphocarrier protein HPr
L1_007_000G1_scaffold_197_12
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12906..14591
DNA (1686bp) protein (562aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Clostridium sp. D5 RepID=F0YW58_9CLOT
phosphoenolpyruvate-protein phosphotransferase
L1_007_000G1_scaffold_197_13
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14611..15459
DNA (849bp) protein (283aa)
L-xylulose 5-phosphate 3-epimerase (EC:5.1.3.22 5.-.-.-)
Putative hexulose-6-phosphate isomerase n=1 Tax=Clostridium sp. D5 RepID=F0YW59_9CLOT
Putative hexulose-6-phosphate isomerase {ECO:0000313|EMBL:EGB93897.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_000G1_scaffold_197_14
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15467..16516
DNA (1050bp) protein (350aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YW60_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93898.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_000G1_scaffold_197_15
unknown

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comp(16769..17035)
DNA (267bp) protein (89aa)

This feature has no annotations

L1_007_000G1_scaffold_197_16
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17137..18339
DNA (1203bp) protein (401aa)
Putative membrane protein n=1 Tax=Clostridium sp. D5 RepID=F0Z3E6_9CLOT
Putative membrane protein {ECO:0000313|EMBL:EGB91578.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Predicted permease
L1_007_000G1_scaffold_197_17
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18431..20476
DNA (2046bp) protein (682aa)
DHH family protein n=1 Tax=Clostridium sp. D5 RepID=F0Z3E7_9CLOT
DHH family protein {ECO:0000313|EMBL:EGB91579.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L1_007_000G1_scaffold_197_18
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20477..20926
DNA (450bp) protein (150aa)
50S ribosomal protein L9 n=1 Tax=Clostridium sp. D5 RepID=F0Z3E8_9CLOT
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
LSU ribosomal protein L9P
L1_007_000G1_scaffold_197_19
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20940..22283
DNA (1344bp) protein (448aa)
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Clostridium sp. D5 RepID=F0Z3E9_9CLOT
Replicative DNA helicase {ECO:0000313|EMBL:EGB91581.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_000G1_scaffold_197_20
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22771..24801)
DNA (2031bp) protein (677aa)
Putative sensory transducer protein n=1 Tax=Clostridium sp. D5 RepID=F0Z3F0_9CLOT
Putative sensory transducer protein {ECO:0000313|EMBL:EGB91582.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
methyl-accepting chemotaxis protein
L1_007_000G1_scaffold_197_21
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25058..25822)
DNA (765bp) protein (255aa)
Transcriptional regulator, MerR family n=1 Tax=Clostridium sp. D5 RepID=F0Z3F1_9CLOT
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EGB91583.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Predicted transcriptional regulators
L1_007_000G1_scaffold_197_22
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26079..26249)
DNA (171bp) protein (57aa)
Conserved domain protein n=1 Tax=Clostridium sp. D5 RepID=F0Z3F2_9CLOT
Conserved domain protein {ECO:0000313|EMBL:EGB91584.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L1_007_000G1_scaffold_197_23
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26542..27795
DNA (1254bp) protein (418aa)
ABC sugar transporter, periplasmic ligand binding protein n=1 Tax=Clostridium sp. D5 RepID=F0Z3F3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGN31280.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L1_007_000G1_scaffold_197_24
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27873..29288)
DNA (1416bp) protein (472aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Sensory box histidine kinase YycG n=1 Tax=Clostridium sp. D5 RepID=F0Z3F4_9CLOT
Signal transduction histidine kinase
L1_007_000G1_scaffold_197_25
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29329..30030)
DNA (702bp) protein (234aa)
DNA-binding response regulator n=1 Tax=Clostridium sp. D5 RepID=F0Z3F5_9CLOT
DNA-binding response regulator {ECO:0000313|EMBL:EGB91587.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_000G1_scaffold_197_26
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30045..32348)
DNA (2304bp) protein (768aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Endonuclease MutS2 n=1 Tax=Clostridium sp. D5 RepID=F0Z3F6_9CLOT
MutS2 family protein
L1_007_000G1_scaffold_197_27
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32586..33875
DNA (1290bp) protein (430aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z3F7_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91589.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L1_007_000G1_scaffold_197_28
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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33940..34881
DNA (942bp) protein (314aa)
Cmp-binding-factor 1 n=1 Tax=Clostridium sp. D5 RepID=F0Z3F8_9CLOT
Cmp-binding-factor 1 {ECO:0000313|EMBL:EGB91590.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
uncharacterized domain HDIG
L1_007_000G1_scaffold_197_29
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35120..36640
DNA (1521bp) protein (507aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Clostridium sp. D5 RepID=F0Z3F9_9CLOT
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EGB91591.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_000G1_scaffold_197_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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36713..36934
DNA (222bp) protein (74aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EEV00995.1}; EC=2.1.1.- {ECO:0000313|EMBL:EEV00995.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JJ93_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Displaying items 1-30 of 108 in total

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