ggKbase home page

L1_007_000G1_scaffold_216

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_216_1
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

142..756
DNA (615bp) protein (205aa)
UPI0003D5B953 related cluster n=1 Tax=unknown RepID=UPI0003D5B953
Uncharacterized protein {ECO:0000313|EMBL:ETI82040.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_216_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1203..2357
DNA (1155bp) protein (385aa)
UPI0003D5B652 related cluster n=1 Tax=unknown RepID=UPI0003D5B652
Uncharacterized protein {ECO:0000313|EMBL:ETI82041.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
periplasmic binding protein and sugar binding domain of the LacI family protein
L1_007_000G1_scaffold_216_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2354..3889
DNA (1536bp) protein (512aa)
UPI0003D5F7DC related cluster n=1 Tax=unknown RepID=UPI0003D5F7DC
Uncharacterized protein {ECO:0000313|EMBL:ETI82042.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative ribose transport, ATP-binding protein RbsA
L1_007_000G1_scaffold_216_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3882..4844
DNA (963bp) protein (321aa)
UPI0003D5B57C related cluster n=1 Tax=unknown RepID=UPI0003D5B57C
Uncharacterized protein {ECO:0000313|EMBL:ETI82043.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
branched-chain amino acid ABC transporter permease
L1_007_000G1_scaffold_216_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4901..6952
DNA (2052bp) protein (684aa)
UPI0003D6233D related cluster n=1 Tax=unknown RepID=UPI0003D6233D
Uncharacterized protein {ECO:0000313|EMBL:ETI82044.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
beta-galactosidase
L1_007_000G1_scaffold_216_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6964..7743
DNA (780bp) protein (260aa)
UPI0003D5DF24 related cluster n=1 Tax=unknown RepID=UPI0003D5DF24
Uncharacterized protein {ECO:0000313|EMBL:ETI82045.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_216_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7878..8948)
DNA (1071bp) protein (357aa)
UPI0003D661CE related cluster n=1 Tax=unknown RepID=UPI0003D661CE
Transcriptional regulator {ECO:0000313|EMBL:ETI82046.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative LacI transcriptional repressor
L1_007_000G1_scaffold_216_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9119..11188
DNA (2070bp) protein (690aa)
UPI0003D69829 related cluster n=1 Tax=unknown RepID=UPI0003D69829
Uncharacterized protein {ECO:0000313|EMBL:ETI82047.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
choline transporter BetT
L1_007_000G1_scaffold_216_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11381..11749
DNA (369bp) protein (123aa)
UPI0003D5D67F related cluster n=1 Tax=unknown RepID=UPI0003D5D67F
Pyridoxamine 5'-phosphate oxidase-like protein {ECO:0000313|EMBL:ETI82048.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
pyridoxamine 5'-phosphate oxidase-like protein
L1_007_000G1_scaffold_216_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11796..14048)
DNA (2253bp) protein (751aa)
UPI0003D5FEE7 related cluster n=1 Tax=unknown RepID=UPI0003D5FEE7
Uncharacterized protein {ECO:0000313|EMBL:ETI82049.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
copper/silver-translocating P-type ATPase
L1_007_000G1_scaffold_216_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14408..16855)
DNA (2448bp) protein (816aa)
UPI0003D5CEB3 related cluster n=1 Tax=unknown RepID=UPI0003D5CEB3
Uncharacterized protein {ECO:0000313|EMBL:ETI82050.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_216_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16877..17488)
DNA (612bp) protein (204aa)
UPI0003D64B66 related cluster n=1 Tax=unknown RepID=UPI0003D64B66
Dihydroxyacetone kinase, L subunit {ECO:0000313|EMBL:ETI82051.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
dihydroxyacetone kinase
L1_007_000G1_scaffold_216_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17491..18492)
DNA (1002bp) protein (334aa)
dhaK; DhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit (EC:2.7.1.-)
UPI0003D5CA02 related cluster n=1 Tax=unknown RepID=UPI0003D5CA02
Uncharacterized protein {ECO:0000313|EMBL:ETI82052.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_216_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18613..20025)
DNA (1413bp) protein (471aa)
UPI0003D6570C related cluster n=1 Tax=unknown RepID=UPI0003D6570C
Uncharacterized protein {ECO:0000313|EMBL:ETI82053.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
membrane protein
L1_007_000G1_scaffold_216_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20038..20811)
DNA (774bp) protein (258aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D66324 related cluster n=1 Tax=unknown RepID=UPI0003D66324
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
L1_007_000G1_scaffold_216_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20829..21344)
DNA (516bp) protein (172aa)
UPI0003D60202 related cluster n=1 Tax=unknown RepID=UPI0003D60202
Transcriptional regulator, CarD family {ECO:0000313|EMBL:ETI82055.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_216_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21536..22669)
DNA (1134bp) protein (378aa)
UPI0003D5EC35 related cluster n=1 Tax=unknown RepID=UPI0003D5EC35
Metallophosphoesterase {ECO:0000313|EMBL:ETI82056.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
metallophosphoesterase
L1_007_000G1_scaffold_216_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22673..24880)
DNA (2208bp) protein (736aa)
UPI0003D617ED related cluster n=1 Tax=unknown RepID=UPI0003D617ED
Uncharacterized protein {ECO:0000313|EMBL:ETI82057.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative penicillin-binding protein
L1_007_000G1_scaffold_216_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25067..25396
DNA (330bp) protein (110aa)
transcriptional regulator n=2 Tax=Varibaculum cambriense RepID=UPI0003B4E422
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
transcription factor WhiB
L1_007_000G1_scaffold_216_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25623..26057
DNA (435bp) protein (145aa)
UPI0003D64786 related cluster n=1 Tax=unknown RepID=UPI0003D64786
Endoribonuclease L-PSP family protein {ECO:0000313|EMBL:ETI82059.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
LysR family transcriptional regulator
L1_007_000G1_scaffold_216_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26068..26418)
DNA (351bp) protein (117aa)
UPI0003D5C426 related cluster n=1 Tax=unknown RepID=UPI0003D5C426
Uncharacterized protein {ECO:0000313|EMBL:ETI82060.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_216_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26420..27913)
DNA (1494bp) protein (498aa)
UPI0003D5B5F1 related cluster n=1 Tax=unknown RepID=UPI0003D5B5F1
Uncharacterized protein {ECO:0000313|EMBL:ETI82061.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
major facilitator superfamily protein
L1_007_000G1_scaffold_216_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28006..28377
DNA (372bp) protein (124aa)
UPI0003D699BA related cluster n=1 Tax=unknown RepID=UPI0003D699BA
Uncharacterized protein {ECO:0000313|EMBL:ETI82062.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_216_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28520..29194
DNA (675bp) protein (225aa)
UPI0003D67F34 related cluster n=1 Tax=unknown RepID=UPI0003D67F34
Uncharacterized protein {ECO:0000313|EMBL:ETI82063.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_216_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29196..29477
DNA (282bp) protein (94aa)
UPI0003D5986B related cluster n=1 Tax=unknown RepID=UPI0003D5986B
Uncharacterized protein {ECO:0000313|EMBL:ETI82064.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_216_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29657..29857
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B5F6C4
Uncharacterized protein {ECO:0000313|EMBL:ETI82065.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_216_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29937..32492)
DNA (2556bp) protein (852aa)
UPI0003D61058 related cluster n=1 Tax=unknown RepID=UPI0003D61058
Uncharacterized protein {ECO:0000313|EMBL:ETI82066.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_216_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32489..34432)
DNA (1944bp) protein (648aa)
UPI0003D64126 related cluster n=1 Tax=unknown RepID=UPI0003D64126
ABC superfamily ATP binding cassette transporter ABC protein {ECO:0000313|EMBL:ETI82067.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC transporter
L1_007_000G1_scaffold_216_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34544..34804
DNA (261bp) protein (87aa)
UPI0003D69979 related cluster n=1 Tax=unknown RepID=UPI0003D69979
Uncharacterized protein {ECO:0000313|EMBL:ETI82068.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_216_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34807..36165
DNA (1359bp) protein (453aa)
UPI0003D67A69 related cluster n=1 Tax=unknown RepID=UPI0003D67A69
Uncharacterized protein {ECO:0000313|EMBL:ETI82069.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
Displaying items 1-30 of 91 in total

View Taxonomy