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L1_007_000G1_scaffold_259

Search features with annotation key words

Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_259_1
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..1101)
DNA (1101bp) protein (367aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
DNA-methyltransferase (dcm) (EC:2.1.1.37)
Cytosine-specific methyltransferase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBK0_9FIRM
L1_007_000G1_scaffold_259_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1283..1741
DNA (459bp) protein (153aa)
T/G mismatch-specific endonuclease (EC:3.1.-.-)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78983.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000G1_scaffold_259_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1842..2168)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78985.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000G1_scaffold_259_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2216..3403)
DNA (1188bp) protein (396aa)
Elongation factor Tu n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=EFTU_EUBR3
elongation factor Tu
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L1_007_000G1_scaffold_259_5
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3521..5638)
DNA (2118bp) protein (706aa)
Elongation factor G n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TUP7_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
elongation factor G
L1_007_000G1_scaffold_259_6
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5666..6136)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Lachnobacterium bovis RepID=UPI0003B65C50
ribosomal protein S7, bacterial/organelle
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
L1_007_000G1_scaffold_259_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6316..6735)
DNA (420bp) protein (140aa)
30S ribosomal protein S12 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJT1_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
30S ribosomal protein S12
L1_007_000G1_scaffold_259_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6909..10784)
DNA (3876bp) protein (1292aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Roseburia sp. CAG:18 RepID=R5US22_9FIRM
DNA-directed RNA polymerase subunit beta'
L1_007_000G1_scaffold_259_9
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10804..14742)
DNA (3939bp) protein (1313aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Roseburia sp. CAG:197 RepID=R5YCH9_9FIRM
L1_007_000G1_scaffold_259_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14980..15354)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=1 Tax=Roseburia sp. CAG:18 RepID=R5VA70_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
LSU ribosomal protein L12P
L1_007_000G1_scaffold_259_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15390..15929)
DNA (540bp) protein (180aa)
50S ribosomal protein L10 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UH55_9FIRM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
rplJ; 50S ribosomal protein L10
L1_007_000G1_scaffold_259_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16238..16933)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP97_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
50S ribosomal protein L1
L1_007_000G1_scaffold_259_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17007..17432)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHV1_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
LSU ribosomal protein L11P
L1_007_000G1_scaffold_259_14
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17446..17964)
DNA (519bp) protein (173aa)
Transcription termination/antitermination protein NusG n=2 Tax=environmental samples RepID=R5V2H2_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
transcription antitermination protein nusG
L1_007_000G1_scaffold_259_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17982..18197)
DNA (216bp) protein (72aa)
Protein translocase subunit SecE n=1 Tax=Roseburia sp. CAG:18 RepID=R5VA74_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
protein translocase subunit secE/sec61 gamma
L1_007_000G1_scaffold_259_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18224..18427)
DNA (204bp) protein (68aa)
50S ribosomal protein L33 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UH58_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
LSU ribosomal protein L33P
L1_007_000G1_scaffold_259_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18710..20008
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77584.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000G1_scaffold_259_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20071..21189)
DNA (1119bp) protein (373aa)
UDP-galactopyranose mutase (EC:5.4.99.9)
UDP-galactopyranose mutase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHV6_9FIRM
UDP-galactopyranose mutase {ECO:0000313|EMBL:CCZ77585.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000G1_scaffold_259_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21186..21743)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2H7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77586.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glycopeptide antibiotics resistance protein
L1_007_000G1_scaffold_259_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21843..22889
DNA (1047bp) protein (349aa)
Glycosyltransferase Family 2 candidate b-glycosyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VA78_9FIRM
Glycosyltransferase Family 2 candidate b-glycosyltransferase {ECO:0000313|EMBL:CCZ77587.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glycosyltransferase Family 2 candidate b-glycosyltransferase
L1_007_000G1_scaffold_259_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22949..23203)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DZF4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81371.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000G1_scaffold_259_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23205..24356)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79695.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000G1_scaffold_259_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24359..24766)
DNA (408bp) protein (136aa)
Transcriptional regulator BlaI/MecI/CopY family n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8C7_9FIRM
Transcriptional regulator BlaI/MecI/CopY family {ECO:0000313|EMBL:CCZ79696.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Penicillinase repressor.
L1_007_000G1_scaffold_259_24
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24992..27094)
DNA (2103bp) protein (701aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
Alpha amylase catalytic domain protein n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NNJ4_9FIRM
hypothetical protein
L1_007_000G1_scaffold_259_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27443..28261)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VG21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79697.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000G1_scaffold_259_26
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28325..29326)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MB35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS67876.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
hypothetical protein
L1_007_000G1_scaffold_259_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29336..29773)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79699.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000G1_scaffold_259_28
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30065..30991)
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHK9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK93106.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000G1_scaffold_259_29
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31252..32103)
DNA (852bp) protein (284aa)
ketose-bisphosphate aldolases (EC:4.1.2.13 4.1.2.40)
Fructose-1,6-bisphosphate aldolase, class II n=1 Tax=Clostridium sp. D5 RepID=F0Z479_9CLOT
Fructose-1,6-bisphosphate aldolase, class II {ECO:0000313|EMBL:EGB91192.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_000G1_scaffold_259_30
unknown

Not on your lists

comp(32135..32743)
DNA (609bp) protein (203aa)
hypothetical protein
Displaying items 1-30 of 107 in total

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