ggKbase home page

L1_007_000G1_scaffold_355

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_355_1
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(186..3734)
DNA (3549bp) protein (1183aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
DNA polymerase III subunit alpha (EC:2.7.7.7)
UPI0003D59FD6 related cluster n=1 Tax=unknown RepID=UPI0003D59FD6
L1_007_000G1_scaffold_355_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4277..6601)
DNA (2325bp) protein (775aa)
UPI0003D5F2BA related cluster n=1 Tax=unknown RepID=UPI0003D5F2BA
Uncharacterized protein {ECO:0000313|EMBL:ETI82727.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_355_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6611..7300)
DNA (690bp) protein (230aa)
UPI0003D684CA related cluster n=1 Tax=unknown RepID=UPI0003D684CA
Uncharacterized protein {ECO:0000313|EMBL:ETI82726.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_355_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7431..7583
DNA (153bp) protein (51aa)
UPI0003D5F949 related cluster n=1 Tax=unknown RepID=UPI0003D5F949
Uncharacterized protein {ECO:0000313|EMBL:ETI82725.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
TP901 family phage tail tape measure protein
L1_007_000G1_scaffold_355_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7709..7954)
DNA (246bp) protein (82aa)
UPI0003D62399 related cluster n=1 Tax=unknown RepID=UPI0003D62399
Uncharacterized protein {ECO:0000313|EMBL:ETI82724.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_355_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8135..8611)
DNA (477bp) protein (159aa)
UPI0003D5FEAC related cluster n=1 Tax=unknown RepID=UPI0003D5FEAC
Uncharacterized protein {ECO:0000313|EMBL:ETI82723.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
L1_007_000G1_scaffold_355_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8853..9959)
DNA (1107bp) protein (369aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D593CC related cluster n=1 Tax=unknown RepID=UPI0003D593CC
tRNA-specific 2-thiouridylase mnmA
L1_007_000G1_scaffold_355_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9960..11204)
DNA (1245bp) protein (415aa)
aminotransferase n=1 Tax=Varibaculum cambriense RepID=UPI0003B3089F
Cysteine desulfurase {ECO:0000313|EMBL:ETI82721.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative aminotransferase
L1_007_000G1_scaffold_355_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11204..12187)
DNA (984bp) protein (328aa)
UPI0003D6528F related cluster n=1 Tax=unknown RepID=UPI0003D6528F
Electron transfer flavoprotein alpha subunit {ECO:0000313|EMBL:ETI82720.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Electron transfer flavoprotein alpha subunit
L1_007_000G1_scaffold_355_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12197..12985)
DNA (789bp) protein (263aa)
UPI0003D5B393 related cluster n=1 Tax=unknown RepID=UPI0003D5B393
Uncharacterized protein {ECO:0000313|EMBL:ETI82719.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Electron transfer flavoprotein alpha/beta-subunit
L1_007_000G1_scaffold_355_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13127..15376
DNA (2250bp) protein (750aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D69A60 related cluster n=1 Tax=unknown RepID=UPI0003D69A60
glycogen debranching enzyme GlgX
L1_007_000G1_scaffold_355_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15605..15847
DNA (243bp) protein (81aa)
UPI0003D5E1AF related cluster n=1 Tax=unknown RepID=UPI0003D5E1AF
Uncharacterized protein {ECO:0000313|EMBL:ETI82717.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_355_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16202..17365
DNA (1164bp) protein (388aa)
UPI0003D63141 related cluster n=1 Tax=unknown RepID=UPI0003D63141
Uncharacterized protein {ECO:0000313|EMBL:ETI82716.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
type I restriction-modification system specificity protein
L1_007_000G1_scaffold_355_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17743..18555
DNA (813bp) protein (271aa)
UPI0003D62975 related cluster n=1 Tax=unknown RepID=UPI0003D62975
Uncharacterized protein {ECO:0000313|EMBL:ETI82715.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Hypothetical protein
L1_007_000G1_scaffold_355_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19212..20315
DNA (1104bp) protein (368aa)
UPI0003D6982C related cluster n=1 Tax=unknown RepID=UPI0003D6982C
Uncharacterized protein {ECO:0000313|EMBL:ETI82714.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
tryptophanyl-tRNA synthetase
L1_007_000G1_scaffold_355_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20320..20985
DNA (666bp) protein (222aa)
UPI0003D67F7A related cluster n=1 Tax=unknown RepID=UPI0003D67F7A
Protein SanA {ECO:0000313|EMBL:ETI82713.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_355_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21113..23410
DNA (2298bp) protein (766aa)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; Short=GMPMT {ECO:0000256|HAMAP-Rule:MF_02124};; EC=2.4.99.16 {ECO:0000256|HAMAP-Rule:MF_02124};; (1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D653D2 related cluster n=1 Tax=unknown RepID=UPI0003D653D2
alpha amylase catalytic region
L1_007_000G1_scaffold_355_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23437..25344
DNA (1908bp) protein (636aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
trehalose synthase n=1 Tax=Varibaculum cambriense RepID=UPI0003B7ACE2
trehalose synthase
L1_007_000G1_scaffold_355_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25334..26668
DNA (1335bp) protein (445aa)
UPI0003D62617 related cluster n=1 Tax=unknown RepID=UPI0003D62617
Uncharacterized protein {ECO:0000313|EMBL:ETI82710.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_355_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26786..31927
DNA (5142bp) protein (1714aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
UPI0003D60C3F related cluster n=1 Tax=unknown RepID=UPI0003D60C3F
Uncharacterized protein {ECO:0000313|EMBL:ETI82709.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_355_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31924..33435)
DNA (1512bp) protein (504aa)
UPI0003D658B7 related cluster n=1 Tax=unknown RepID=UPI0003D658B7
Uncharacterized protein {ECO:0000313|EMBL:ETI82708.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
PucR family transcriptional regulator
L1_007_000G1_scaffold_355_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33637..34893
DNA (1257bp) protein (419aa)
glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.3)
UPI0003D664E6 related cluster n=1 Tax=unknown RepID=UPI0003D664E6
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_355_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35061..36530
DNA (1470bp) protein (490aa)
UPI0003D5B837 related cluster n=1 Tax=unknown RepID=UPI0003D5B837
Uncharacterized protein {ECO:0000313|EMBL:ETI82706.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
succinate-semialdehyde dehydrogenase
L1_007_000G1_scaffold_355_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37034..39217
DNA (2184bp) protein (728aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
glgB; 1,4-alpha-glucan branching protein (EC:2.4.1.18)
UPI0003D64DA4 related cluster n=1 Tax=unknown RepID=UPI0003D64DA4
L1_007_000G1_scaffold_355_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39386..40651)
DNA (1266bp) protein (422aa)
UPI0003D5B63D related cluster n=1 Tax=unknown RepID=UPI0003D5B63D
Uncharacterized protein {ECO:0000313|EMBL:ETI82704.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
manganese transporter
L1_007_000G1_scaffold_355_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(40807..41316)
DNA (510bp) protein (170aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D5A3C2 related cluster n=1 Tax=unknown RepID=UPI0003D5A3C2
transcriptional regulator
L1_007_000G1_scaffold_355_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41537..42475
DNA (939bp) protein (313aa)
UPI0003D6312E related cluster n=1 Tax=unknown RepID=UPI0003D6312E
Uncharacterized protein {ECO:0000313|EMBL:ETI82702.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
antibiotic ABC transporter ATP-binding protein
L1_007_000G1_scaffold_355_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

42478..43737
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B46C35
ABC-2 type transporter {ECO:0000313|EMBL:ETI82701.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_355_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

43724..44872
DNA (1149bp) protein (383aa)
UPI0003D6006B related cluster n=1 Tax=unknown RepID=UPI0003D6006B
Uncharacterized protein {ECO:0000313|EMBL:ETI82700.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_355_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(45064..45771)
DNA (708bp) protein (236aa)
UPI0003D5E3E7 related cluster n=1 Tax=unknown RepID=UPI0003D5E3E7
Cadmium binding protein {ECO:0000313|EMBL:ETI82699.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
cadmium binding protein
Displaying items 1-30 of 67 in total

View Taxonomy