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L1_007_000G1_scaffold_405

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_405_1
unknown

Not on your lists

comp(1..72)
DNA (72bp) protein (24aa)

This feature has no annotations

L1_007_000G1_scaffold_405_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(196..1413)
DNA (1218bp) protein (406aa)
UPI0003D67A68 related cluster n=1 Tax=unknown RepID=UPI0003D67A68
Uncharacterized protein {ECO:0000313|EMBL:ETI83181.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_405_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1808..2083
DNA (276bp) protein (92aa)
UPI0003D6881C related cluster n=1 Tax=unknown RepID=UPI0003D6881C
Uncharacterized protein {ECO:0000313|EMBL:ETI83183.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
RelB/DinJ family addiction module antitoxin
L1_007_000G1_scaffold_405_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2080..2361
DNA (282bp) protein (94aa)
UPI0003D67118 related cluster n=1 Tax=unknown RepID=UPI0003D67118
Toxin-antitoxin system, toxin component, RelE family {ECO:0000313|EMBL:ETI83184.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
addiction module toxin, RelE/StbE family
L1_007_000G1_scaffold_405_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2499..3248)
DNA (750bp) protein (250aa)
UPI0003D69BDF related cluster n=1 Tax=unknown RepID=UPI0003D69BDF
Uncharacterized protein {ECO:0000313|EMBL:ETI83185.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_405_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3245..3580)
DNA (336bp) protein (112aa)
UPI0003D5F0E1 related cluster n=1 Tax=unknown RepID=UPI0003D5F0E1
Uncharacterized protein {ECO:0000313|EMBL:ETI83186.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
DNA-binding protein
L1_007_000G1_scaffold_405_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4396..5958
DNA (1563bp) protein (521aa)
UPI0003D661F5 related cluster n=1 Tax=unknown RepID=UPI0003D661F5
Cell surface protein {ECO:0000313|EMBL:ETI83188.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
surA; cell surface protein
L1_007_000G1_scaffold_405_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6054..9059)
DNA (3006bp) protein (1002aa)
UPI0003D67AD3 related cluster n=1 Tax=unknown RepID=UPI0003D67AD3
Uncharacterized protein {ECO:0000313|EMBL:ETI83189.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
HsdR family type I site-specific deoxyribonuclease
L1_007_000G1_scaffold_405_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9558..10793)
DNA (1236bp) protein (412aa)
Type I restriction-modification system specificity determinant n=2 Tax=Bifidobacterium bifidum RepID=E4NYL1_BIFBP
type I restriction-modification system specificity determinant
Type I restriction-modification system specificity protein {ECO:0000313|EMBL:BAQ97390.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_007_000G1_scaffold_405_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11041..11958)
DNA (918bp) protein (306aa)
UPI0003D62970 related cluster n=1 Tax=unknown RepID=UPI0003D62970
Uncharacterized protein {ECO:0000313|EMBL:ETI83192.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_405_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12104..13681)
DNA (1578bp) protein (526aa)
UPI0003D658DC related cluster n=1 Tax=unknown RepID=UPI0003D658DC
Uncharacterized protein {ECO:0000313|EMBL:ETI83193.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hsdM; Type I restriction endonuclease
L1_007_000G1_scaffold_405_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14022..18284
DNA (4263bp) protein (1421aa)
UPI0003D6744F related cluster n=1 Tax=unknown RepID=UPI0003D6744F
Uncharacterized protein {ECO:0000313|EMBL:ETI83194.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
aap; surface protein
L1_007_000G1_scaffold_405_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18486..19019)
DNA (534bp) protein (178aa)
UPI0003D67B84 related cluster n=1 Tax=unknown RepID=UPI0003D67B84
PBP family phospholipid-binding protein {ECO:0000313|EMBL:ETI83195.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
phospholipid-binding protein, PBP family
L1_007_000G1_scaffold_405_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19152..19610
DNA (459bp) protein (153aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D5E621 related cluster n=1 Tax=unknown RepID=UPI0003D5E621
RNA methyltransferase
L1_007_000G1_scaffold_405_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19607..20047)
DNA (441bp) protein (147aa)
membrane protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B4A2DD
Uncharacterized protein {ECO:0000313|EMBL:ETI83197.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_405_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20333..21700
DNA (1368bp) protein (456aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D5DEAE related cluster n=1 Tax=unknown RepID=UPI0003D5DEAE
dihydrolipoamide dehydrogenase
L1_007_000G1_scaffold_405_17
Janibacter sp. HTCC2649, Janibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21725..23680
DNA (1956bp) protein (652aa)
2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase (EC:2.3.1.61)
dihydrolipoamide acetyltransferase n=1 Tax=Varibaculum cambriense RepID=UPI0003B5161C
Dihydrolipoamide acetyltransferase {ECO:0000313|EMBL:EAP98763.1}; TaxID=313589 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Janibacter.;" source="Janibacter sp. HTCC2649.;"
L1_007_000G1_scaffold_405_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23882..24904)
DNA (1023bp) protein (341aa)
UPI0003D61940 related cluster n=1 Tax=unknown RepID=UPI0003D61940
Uncharacterized protein {ECO:0000313|EMBL:ETI83200.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_405_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24961..26655)
DNA (1695bp) protein (565aa)
UPI0003D5FF0F related cluster n=1 Tax=unknown RepID=UPI0003D5FF0F
Uncharacterized protein {ECO:0000313|EMBL:ETI83201.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
dihydrofolate synthase
L1_007_000G1_scaffold_405_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26887..28461
DNA (1575bp) protein (525aa)
carbohydrate kinase, FGGY family protein (EC:2.7.1.17)
UPI0003D5D26D related cluster n=1 Tax=unknown RepID=UPI0003D5D26D
Uncharacterized protein {ECO:0000313|EMBL:ETI83202.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_405_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28477..29523
DNA (1047bp) protein (349aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU000439}; EC=1.1.1.94 {ECO:0000256|RuleBase:RU000439};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC:1.1.1.94)
UPI0003D67526 related cluster n=1 Tax=unknown RepID=UPI0003D67526
L1_007_000G1_scaffold_405_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29516..30295
DNA (780bp) protein (260aa)
UPI0003D59836 related cluster n=1 Tax=unknown RepID=UPI0003D59836
DeoR family transcriptional regulator {ECO:0000313|EMBL:ETI83204.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
deoR1; transcriptional regulator
L1_007_000G1_scaffold_405_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30392..33658)
DNA (3267bp) protein (1089aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ileS; isoleucine--tRNA ligase (EC:6.1.1.5)
UPI0003D5D5DB related cluster n=1 Tax=unknown RepID=UPI0003D5D5DB
L1_007_000G1_scaffold_405_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33941..34756
DNA (816bp) protein (272aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D5F021 related cluster n=1 Tax=unknown RepID=UPI0003D5F021
pyrroline-5-carboxylate reductase
L1_007_000G1_scaffold_405_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34851..35177
DNA (327bp) protein (109aa)
UPI0003D5F68C related cluster n=1 Tax=unknown RepID=UPI0003D5F68C
Uncharacterized protein {ECO:0000313|EMBL:ETI83207.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_405_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35286..36254
DNA (969bp) protein (323aa)
UPI0003D5FAB6 related cluster n=1 Tax=unknown RepID=UPI0003D5FAB6
Uncharacterized protein {ECO:0000313|EMBL:ETI83208.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
bile acid:sodium symporter
L1_007_000G1_scaffold_405_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(36344..38128)
DNA (1785bp) protein (595aa)
aspartyl-tRNA synthetase (EC:6.1.1.12)
UPI0003D65625 related cluster n=1 Tax=unknown RepID=UPI0003D65625
Uncharacterized protein {ECO:0000313|EMBL:ETI83209.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_405_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38294..40171
DNA (1878bp) protein (626aa)
UPI0003D68966 related cluster n=1 Tax=unknown RepID=UPI0003D68966
Uncharacterized protein {ECO:0000313|EMBL:ETI83210.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
DEAD/DEAH box helicase
L1_007_000G1_scaffold_405_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(40295..41674)
DNA (1380bp) protein (460aa)
UPI0003D60330 related cluster n=1 Tax=unknown RepID=UPI0003D60330
Uncharacterized protein {ECO:0000313|EMBL:ETI83211.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UTP--glucose-1-phosphate uridylyltransferase
L1_007_000G1_scaffold_405_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41703..43043)
DNA (1341bp) protein (447aa)
UPI0003D5A386 related cluster n=1 Tax=unknown RepID=UPI0003D5A386
Uncharacterized protein {ECO:0000313|EMBL:ETI83212.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
Displaying items 1-30 of 70 in total

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