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L1_007_000G1_scaffold_495

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Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_495_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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335..1684
DNA (1350bp) protein (450aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Transcription termination factor Rho n=2 Tax=Ruminococcus lactaris RepID=B5CKW3_9FIRM
transcription termination factor Rho
L1_007_000G1_scaffold_495_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1776..1976
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=4 Tax=Clostridiales RepID=D4M540_9FIRM
LSU ribosomal protein L31P
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L1_007_000G1_scaffold_495_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2078..2992
DNA (915bp) protein (305aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CKW5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY34028.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted metal-dependent enzyme
L1_007_000G1_scaffold_495_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2992..3912
DNA (921bp) protein (307aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Release factor glutamine methyltransferase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKW6_9FIRM
protein-(glutamine-N5) methyltransferase, release factor-specific
L1_007_000G1_scaffold_495_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3963..5033
DNA (1071bp) protein (357aa)
Peptide chain release factor 1 n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKW7_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
bacterial peptide chain release factor 1 (bRF-1)
L1_007_000G1_scaffold_495_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5088..6299
DNA (1212bp) protein (404aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EDY34031.1}; EC=2.6.1.- {ECO:0000313|EMBL:EDY34031.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Aspartate/tyrosine/aromatic aminotransferase (EC:2.6.1.1)
Aminotransferase, class I/II n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKW8_9FIRM
L1_007_000G1_scaffold_495_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6382..7449
DNA (1068bp) protein (356aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKW9_9FIRM
L1_007_000G1_scaffold_495_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7455..7964
DNA (510bp) protein (170aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8C4H0_9FIRM
Putative small multi-drug export protein {ECO:0000313|EMBL:EDY34033.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted membrane protein
L1_007_000G1_scaffold_495_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7994..8449
DNA (456bp) protein (152aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CKX1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY34034.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L1_007_000G1_scaffold_495_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8471..9538
DNA (1068bp) protein (356aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKX2_9FIRM
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
L1_007_000G1_scaffold_495_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9526..14079
DNA (4554bp) protein (1518aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
DNA polymerase III polC-type n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKX3_9FIRM
DNA polymerase III subunit alpha
L1_007_000G1_scaffold_495_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14144..15379
DNA (1236bp) protein (412aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=2 Tax=Ruminococcus lactaris RepID=B5CKX4_9FIRM
L1_007_000G1_scaffold_495_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15439..16575
DNA (1137bp) protein (379aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8C4H4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD21957.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
exonuclease SbcD
L1_007_000G1_scaffold_495_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16589..19816
DNA (3228bp) protein (1076aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C3K9_9FIRM
Exonuclease SbcCD, C subunit {ECO:0000313|EMBL:EDY34039.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L1_007_000G1_scaffold_495_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19891..21201
DNA (1311bp) protein (437aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
phenylacetate--CoA ligase (EC:6.2.1.30)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CKX7_9FIRM
L1_007_000G1_scaffold_495_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21203..22948
DNA (1746bp) protein (582aa)
Indolepyruvate oxidoreductase subunit IorA {ECO:0000256|PIRNR:PIRNR006439}; Short=IOR {ECO:0000256|PIRNR:PIRNR006439};; EC=1.2.7.8 {ECO:0000256|PIRNR:PIRNR006439};; Indolepyruvate ferredoxin oxidoreductase subunit alpha {ECO:0000256|PIRNR:PIRNR006439}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
indolepyruvate ferredoxin oxidoreductase, alpha subunit (EC:1.2.7.8)
Indolepyruvate ferredoxin oxidoreductase, alpha subunit n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKX8_9FIRM
L1_007_000G1_scaffold_495_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22950..23519
DNA (570bp) protein (190aa)
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8)
Putative indolepyruvate ferredoxin oxidoreductase, beta subunit n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKX9_9FIRM
Putative indolepyruvate ferredoxin oxidoreductase, beta subunit {ECO:0000313|EMBL:EDY34042.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L1_007_000G1_scaffold_495_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23548..23967
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4H7_9FIRM
ACT domain protein {ECO:0000313|EMBL:EDY34043.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
amino acid-binding ACT domain-containing protein
L1_007_000G1_scaffold_495_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23985..25316
DNA (1332bp) protein (444aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
phenylacetate--CoA ligase (EC:6.2.1.30)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CKY1_9FIRM
L1_007_000G1_scaffold_495_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25333..25779
DNA (447bp) protein (149aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CKY2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD21964.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
amino acid-binding ACT domain-containing protein
L1_007_000G1_scaffold_495_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26157..26354)
DNA (198bp) protein (66aa)
Cold-shock DNA-binding domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CKY4_9FIRM
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:EDY34047.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
cold-shock DNA-binding protein family
L1_007_000G1_scaffold_495_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26610..27359
DNA (750bp) protein (250aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8C5F9_9FIRM
Putative phage tail component domain protein {ECO:0000313|EMBL:EDY34048.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Transcriptional regulators of sugar metabolism
L1_007_000G1_scaffold_495_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27356..28276
DNA (921bp) protein (307aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase n=2 Tax=Ruminococcus lactaris RepID=B5CKY6_9FIRM
L1_007_000G1_scaffold_495_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28289..30205
DNA (1917bp) protein (639aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=2 Tax=Ruminococcus lactaris RepID=B5CKY7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD21968.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
PTS system, fructose-specific component family
L1_007_000G1_scaffold_495_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30265..30522
DNA (258bp) protein (86aa)
Phosphocarrier, HPr family n=2 Tax=Ruminococcus lactaris RepID=B5CKY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD21969.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
phosphotransferase system, phosphocarrier protein HPr
L1_007_000G1_scaffold_495_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30525..32147
DNA (1623bp) protein (541aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=2 Tax=Ruminococcus lactaris RepID=B5CKY9_9FIRM
L1_007_000G1_scaffold_495_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32352..32810
DNA (459bp) protein (153aa)
Nodulation efficiency protein D n=2 Tax=Ruminococcus lactaris RepID=B5CKZ0_9FIRM
Nodulation efficiency protein D {ECO:0000313|EMBL:EDY34053.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Membrane protein implicated in regulation of membrane protease activity
L1_007_000G1_scaffold_495_28
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32801..33751
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4I7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD21972.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Membrane protease subunits, stomatin/prohibitin homologs
L1_007_000G1_scaffold_495_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33752..34309
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C3M4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD21973.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Rad3-related DNA helicases
L1_007_000G1_scaffold_495_30
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34303..34677
DNA (375bp) protein (125aa)
DEAD2 domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CKZ2_9FIRM
DEAD2 domain protein {ECO:0000313|EMBL:EDY34055.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Rad3-related DNA helicases
Displaying items 1-30 of 77 in total

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