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L1_007_000G1_scaffold_534

Search features with annotation key words

Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_534_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..288)
DNA (288bp) protein (96aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7GHH4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09671.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_007_000G1_scaffold_534_2
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(339..890)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4S110_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFF68040.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
hypothetical protein
L1_007_000G1_scaffold_534_3
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(932..1186)
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M0G6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL27526.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000G1_scaffold_534_4
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

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comp(1186..1629)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EP72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA98586.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
hypothetical protein
L1_007_000G1_scaffold_534_5
unknown

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comp(1666..1872)
DNA (207bp) protein (69aa)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00030B0FE1
L1_007_000G1_scaffold_534_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2024..4669)
DNA (2646bp) protein (882aa)
pyruvate, phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:CBK94677.1}; EC=2.7.9.1 {ECO:0000313|EMBL:CBK94677.1};; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Pyruvate, phosphate dikinase n=2 Tax=Eubacterium rectale RepID=C4ZAU6_EUBR3
L1_007_000G1_scaffold_534_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4904..6301)
DNA (1398bp) protein (466aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glycine--tRNA ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8T1_9FIRM
glycyl-tRNA synthetase
L1_007_000G1_scaffold_534_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6360..7151)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79860.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000G1_scaffold_534_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7213..7944)
DNA (732bp) protein (244aa)
DNA repair protein RecO n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVV6_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA replication and repair protein RecO
L1_007_000G1_scaffold_534_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7889..8068)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79858.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000G1_scaffold_534_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8156..9064)
DNA (909bp) protein (303aa)
GTPase Era n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGH7_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
GTP-binding protein Era
L1_007_000G1_scaffold_534_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9084..12011)
DNA (2928bp) protein (976aa)
Predicted Zn-dependent peptidases insulinase-like n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8S6_9FIRM
Predicted Zn-dependent peptidases insulinase-like {ECO:0000313|EMBL:CCZ79856.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted Zn-dependent peptidases, insulinase-like
L1_007_000G1_scaffold_534_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12050..12946)
DNA (897bp) protein (299aa)
Mechanosensitive channel protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP41_9FIRM
Mechanosensitive channel protein {ECO:0000313|EMBL:CCZ79855.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Small-conductance mechanosensitive channel
L1_007_000G1_scaffold_534_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12982..14220)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79854.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000G1_scaffold_534_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14344..15507)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79853.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000G1_scaffold_534_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15509..16591)
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGH1_9FIRM
L1_007_000G1_scaffold_534_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16627..18306)
DNA (1680bp) protein (560aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8S1_9FIRM
L1_007_000G1_scaffold_534_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18325..19998)
DNA (1674bp) protein (558aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP36_9FIRM
L1_007_000G1_scaffold_534_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20011..21111)
DNA (1101bp) protein (367aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVU7_9FIRM
L1_007_000G1_scaffold_534_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21314..21637)
DNA (324bp) protein (108aa)
Preprotein translocase subunit YajC n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNI7_9FIRM
Preprotein translocase subunit YajC {ECO:0000313|EMBL:CCZ79848.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
preprotein translocase subunit YajC
L1_007_000G1_scaffold_534_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21716..22864)
DNA (1149bp) protein (383aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGG7_9FIRM
L1_007_000G1_scaffold_534_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22891..24654)
DNA (1764bp) protein (588aa)
Glycosidases n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8R6_9FIRM
Glycosidases {ECO:0000313|EMBL:CCZ79846.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glycosidases
L1_007_000G1_scaffold_534_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24775..25875
DNA (1101bp) protein (367aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP31_9FIRM
L1_007_000G1_scaffold_534_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25967..28501)
DNA (2535bp) protein (845aa)
Ig domain protein group 2 domain protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQU4_9FIRM
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:CCZ78124.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000G1_scaffold_534_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28620..29873)
DNA (1254bp) protein (418aa)
Peptidase U32 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJC9_9FIRM
Peptidase U32 {ECO:0000313|EMBL:CCZ78125.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
peptidase U32
L1_007_000G1_scaffold_534_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29860..30525)
DNA (666bp) protein (222aa)
O-methyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3X9_9FIRM
O-methyltransferase {ECO:0000313|EMBL:CCZ78126.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted O-methyltransferase
L1_007_000G1_scaffold_534_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30534..30710)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78127.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted periplasmic solute-binding protein
L1_007_000G1_scaffold_534_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30718..32391)
DNA (1674bp) protein (558aa)
Predicted hydrolase of the metallo-beta-lactamase superfamily n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIN2_9FIRM
Predicted hydrolase of the metallo-beta-lactamase superfamily {ECO:0000313|EMBL:CCZ78128.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative hydrolase of the metallo-beta-lactamase superfamily
L1_007_000G1_scaffold_534_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32418..32681)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78129.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Protein of unknown function (DUF1292).
L1_007_000G1_scaffold_534_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32701..33138)
DNA (438bp) protein (146aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Putative Holliday junction resolvase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJD3_9FIRM
hypothetical protein
Displaying items 1-30 of 92 in total

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