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L1_007_000G1_scaffold_590

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_590_1
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

242..1303
DNA (1062bp) protein (354aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HSL3_9FIRM
Tryptophan--tRNA ligase {ECO:0000313|EMBL:CCY32730.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L1_007_000G1_scaffold_590_2
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1729..2052
DNA (324bp) protein (108aa)
UPF0122 protein BN729_01724 n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HX52_9FIRM
UPF0122 protein BN729_01724 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_000G1_scaffold_590_3
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2056..3408
DNA (1353bp) protein (451aa)
Signal recognition particle protein n=1 Tax=Blautia sp. CAG:257 RepID=R5WQC4_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
signal recognition particle protein
L1_007_000G1_scaffold_590_4
Blautia hydrogenotrophica CAG:147, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3463..3708
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002EB5857
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1263061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia hydrogenotrophica CAG:147.;"
SSU ribosomal protein S16P
L1_007_000G1_scaffold_590_5
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3869..4099
DNA (231bp) protein (77aa)
UPF0109 protein BN729_02255 n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I912_9FIRM
UPF0109 protein BN729_02255 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
RNA-binding protein (KH domain)
L1_007_000G1_scaffold_590_6
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4204..4707
DNA (504bp) protein (168aa)
Ribosome maturation factor RimM n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HU59_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
16S rRNA processing protein RimM
L1_007_000G1_scaffold_590_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4708..5472
DNA (765bp) protein (255aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Ruminococcus RepID=C6JB74_9FIRM
L1_007_000G1_scaffold_590_8
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5459..6484
DNA (1026bp) protein (342aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HU09_9FIRM
L1_007_000G1_scaffold_590_9
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6567..8309)
DNA (1743bp) protein (581aa)
Site-specific recombinases DNA invertase Pin homologs n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NBA3_9FIRM
Site-specific recombinases DNA invertase Pin homologs {ECO:0000313|EMBL:CDF09397.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_007_000G1_scaffold_590_10
unknown

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comp(8345..8695)
DNA (351bp) protein (117aa)

This feature has no annotations

L1_007_000G1_scaffold_590_11
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8723..9073)
DNA (351bp) protein (117aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QHS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK57787.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L1_007_000G1_scaffold_590_12
unknown

Not on your lists

9281..9682
DNA (402bp) protein (134aa)
Helix-turn-helix n=1 Tax=butyrate-producing bacterium SSC/2 RepID=D4N1J0_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL38735.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_007_000G1_scaffold_590_13
unknown

Not on your lists

9720..10217
DNA (498bp) protein (166aa)
Helix-turn-helix n=1 Tax=butyrate-producing bacterium SSC/2 RepID=D4N1J1_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL38736.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_007_000G1_scaffold_590_14
unknown

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10220..10405
DNA (186bp) protein (62aa)

This feature has no annotations

L1_007_000G1_scaffold_590_15
unknown

Not on your lists

10359..10607
DNA (249bp) protein (83aa)

This feature has no annotations

L1_007_000G1_scaffold_590_16
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10610..10825
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JSV2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB60886.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hypothetical protein
L1_007_000G1_scaffold_590_17

Not on your lists

10851..11738
DNA (888bp) protein (296aa)
Putative uncharacterized protein n=1 Tax=unidentified phage RepID=H7BV61_9VIRU
Putative uncharacterized protein {ECO:0000313|EMBL:AFB75706.1}; TaxID=38018 species="Viruses; unclassified phages.;" source="unidentified phage.;"
hypothetical protein
L1_007_000G1_scaffold_590_18
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11738..12400
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RDZ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC47088.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L1_007_000G1_scaffold_590_19
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12417..13103
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZPW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM88128.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein
L1_007_000G1_scaffold_590_20

Not on your lists

13105..13941
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=unidentified phage RepID=H7BV58_9VIRU
Putative uncharacterized protein {ECO:0000313|EMBL:AFB75703.1}; TaxID=38018 species="Viruses; unclassified phages.;" source="unidentified phage.;"
hypothetical protein
L1_007_000G1_scaffold_590_21
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13954..14364
DNA (411bp) protein (137aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZPW6_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDM88130.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein
L1_007_000G1_scaffold_590_22
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14373..14657
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZPW7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM88131.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L1_007_000G1_scaffold_590_23
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14654..15073
DNA (420bp) protein (140aa)
Phage protein n=1 Tax=Caloramator australicus RC3 RepID=I7K5S8_9CLOT
Phage protein {ECO:0000313|EMBL:CCJ32874.1}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
endodeoxyribonuclease RusA
L1_007_000G1_scaffold_590_24
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15087..15644
DNA (558bp) protein (186aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZCB4_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75860.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L1_007_000G1_scaffold_590_25
Streptococcus pyogenes, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15592..16542
DNA (951bp) protein (317aa)
ParB-like protein n=6 Tax=Streptococcus pyogenes RepID=T5E2Y0_STRPY
hypothetical protein
Phage protein {ECO:0000313|EMBL:BAR44800.1}; TaxID=1150773 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus pyogenes JRS4.;"
L1_007_000G1_scaffold_590_26
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

16542..17906
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. CAG:196 RepID=R5SFX4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CCZ49759.1}; TaxID=1262690 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" source="Acinetobacter sp. CAG:196.;"
hypothetical protein
L1_007_000G1_scaffold_590_27
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17887..18297)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W3N9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ39535.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L1_007_000G1_scaffold_590_28
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18397..18858
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DD76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD87858.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
hypothetical protein
L1_007_000G1_scaffold_590_29
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18851..20320
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9IJR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS22018.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
hypothetical protein
L1_007_000G1_scaffold_590_30
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20317..21906
DNA (1590bp) protein (530aa)
Phage portal protein, PBSX family n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZPY0_9FIRM
Phage portal protein, PBSX family {ECO:0000313|EMBL:EDM88144.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
phage-like protein
Displaying items 1-30 of 98 in total

View Taxonomy