ggKbase home page

L1_007_000G1_scaffold_1078

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_1078_1
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(457..1128)
DNA (672bp) protein (224aa)
UPI0003D63315 related cluster n=1 Tax=unknown RepID=UPI0003D63315
Uncharacterized protein {ECO:0000313|EMBL:ETI81718.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_1078_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1606..2439
DNA (834bp) protein (278aa)
UPI0003D68C3E related cluster n=1 Tax=unknown RepID=UPI0003D68C3E
Cof family protein {ECO:0000313|EMBL:ETI82166.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hydrolase of the HAD superfamily
L1_007_000G1_scaffold_1078_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2443..3747)
DNA (1305bp) protein (435aa)
UPI0003D595A3 related cluster n=1 Tax=unknown RepID=UPI0003D595A3
Uncharacterized protein {ECO:0000313|EMBL:ETI82165.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_1078_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3744..4430)
DNA (687bp) protein (229aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
UPI0003D62A26 related cluster n=1 Tax=unknown RepID=UPI0003D62A26
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:ETI81715.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_1078_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4488..5996)
DNA (1509bp) protein (503aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
guaB2; IMP dehydrogenase (EC:1.1.1.205)
UPI0003D68A7B related cluster n=1 Tax=unknown RepID=UPI0003D68A7B
L1_007_000G1_scaffold_1078_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6337..6639
DNA (303bp) protein (101aa)
UPI0003D64D24 related cluster n=1 Tax=unknown RepID=UPI0003D64D24
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
transcription factor WhiB
L1_007_000G1_scaffold_1078_7
unknown

Not on your lists

6714..6845
DNA (132bp) protein (44aa)

This feature has no annotations

L1_007_000G1_scaffold_1078_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6935..7150)
DNA (216bp) protein (72aa)
UPI0003D64EBA related cluster n=1 Tax=unknown RepID=UPI0003D64EBA
Uncharacterized protein {ECO:0000313|EMBL:ETI81712.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
DNA-binding protein
L1_007_000G1_scaffold_1078_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7486..8862
DNA (1377bp) protein (459aa)
H(+)-transporting two-sector ATPase (EC:3.6.3.14)
UPI0003D60468 related cluster n=1 Tax=unknown RepID=UPI0003D60468
Putative H(+)-transporting two-sector ATPase {ECO:0000313|EMBL:ETI82160.1}; Uncharacterized protein {ECO:0000313|EMBL:ETI81711.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_1078_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9014..9682)
DNA (669bp) protein (223aa)
UPI0003D5A547 related cluster n=1 Tax=unknown RepID=UPI0003D5A547
Trk family potassium (K+) transporter, NAD+ binding protein {ECO:0000313|EMBL:ETI82159.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
TrkA-N domain-containing protein
L1_007_000G1_scaffold_1078_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9783..11183
DNA (1401bp) protein (467aa)
DNA repair protein RadA (EC:2.1.1.63)
UPI0003D628E6 related cluster n=1 Tax=unknown RepID=UPI0003D628E6
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_1078_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11170..11775)
DNA (606bp) protein (202aa)
UPI0003D61794 related cluster n=1 Tax=unknown RepID=UPI0003D61794
Uncharacterized protein {ECO:0000313|EMBL:ETI81708.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_1078_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11798..12292)
DNA (495bp) protein (165aa)
UPI0003D5DB63 related cluster n=1 Tax=unknown RepID=UPI0003D5DB63
Uncharacterized protein {ECO:0000313|EMBL:ETI82156.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_1078_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12297..14333)
DNA (2037bp) protein (679aa)
UPI0003D59AFE related cluster n=1 Tax=unknown RepID=UPI0003D59AFE
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase {ECO:0000313|EMBL:ETI81706.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
L1_007_000G1_scaffold_1078_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14324..15208)
DNA (885bp) protein (295aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D5D2CC related cluster n=1 Tax=unknown RepID=UPI0003D5D2CC
folP1; putative dihydropteroate synthase
L1_007_000G1_scaffold_1078_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15305..15871)
DNA (567bp) protein (189aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
folE; GTP cyclohydrolase I (EC:3.5.4.16)
UPI0003D5A79C related cluster n=1 Tax=unknown RepID=UPI0003D5A79C
L1_007_000G1_scaffold_1078_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15875..17872)
DNA (1998bp) protein (666aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
UPI0003D660C6 related cluster n=1 Tax=unknown RepID=UPI0003D660C6
L1_007_000G1_scaffold_1078_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18043..18594)
DNA (552bp) protein (184aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
UPI0003D68410 related cluster n=1 Tax=unknown RepID=UPI0003D68410
Uncharacterized protein {ECO:0000313|EMBL:ETI82151.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_000G1_scaffold_1078_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18604..19689)
DNA (1086bp) protein (362aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D64FF2 related cluster n=1 Tax=unknown RepID=UPI0003D64FF2
tRNA(Ile)-lysidine synthetase
L1_007_000G1_scaffold_1078_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19686..21128)
DNA (1443bp) protein (481aa)
UPI0003D62455 related cluster n=1 Tax=unknown RepID=UPI0003D62455
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase {ECO:0000313|EMBL:ETI81700.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
L1_007_000G1_scaffold_1078_21
Actinomyces georgiae, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21255..21803
DNA (549bp) protein (183aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1125717 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces georgiae F0490.;"
inorganic pyrophosphatase n=2 Tax=Varibaculum cambriense RepID=UPI0003B47842
inorganic pyrophosphatase
L1_007_000G1_scaffold_1078_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22063..23409
DNA (1347bp) protein (449aa)
UPI0003D5B361 related cluster n=1 Tax=unknown RepID=UPI0003D5B361
NLP/P60 protein {ECO:0000313|EMBL:ETI82146.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_1078_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23667..24995
DNA (1329bp) protein (443aa)
UPI0003D674AA related cluster n=1 Tax=unknown RepID=UPI0003D674AA
Uncharacterized protein {ECO:0000313|EMBL:ETI82145.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC transporter substrate-binding protein
L1_007_000G1_scaffold_1078_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25212..26057
DNA (846bp) protein (282aa)
UPI0003D5CC63 related cluster n=1 Tax=unknown RepID=UPI0003D5CC63
Uncharacterized protein {ECO:0000313|EMBL:ETI82144.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
binding--dependent transport system inner membrane component family protein
L1_007_000G1_scaffold_1078_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26054..26965
DNA (912bp) protein (304aa)
UPI0003D5F7CF related cluster n=1 Tax=unknown RepID=UPI0003D5F7CF
Uncharacterized protein {ECO:0000313|EMBL:ETI82143.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_1078_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27073..28122
DNA (1050bp) protein (350aa)
UPI0003D5C68F related cluster n=1 Tax=unknown RepID=UPI0003D5C68F
LacI family transcription regulator {ECO:0000313|EMBL:ETI82142.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
LacI family transcriptional regulator
L1_007_000G1_scaffold_1078_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28158..28802
DNA (645bp) protein (215aa)
UPI0003D5974F related cluster n=1 Tax=unknown RepID=UPI0003D5974F
Uncharacterized protein {ECO:0000313|EMBL:ETI82141.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_1078_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29414..30406)
DNA (993bp) protein (331aa)
UPI0003D5AF26 related cluster n=1 Tax=unknown RepID=UPI0003D5AF26
Uncharacterized protein {ECO:0000313|EMBL:ETI82140.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_000G1_scaffold_1078_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30751..34011)
DNA (3261bp) protein (1087aa)
UPI0003D5AC67 related cluster n=1 Tax=unknown RepID=UPI0003D5AC67
Uncharacterized protein {ECO:0000313|EMBL:ETI82139.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
exo-alpha-sialidase
L1_007_000G1_scaffold_1078_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34305..35120
DNA (816bp) protein (272aa)
UPI0003D5A166 related cluster n=1 Tax=unknown RepID=UPI0003D5A166
Uncharacterized protein {ECO:0000313|EMBL:ETI82138.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
Displaying items 1-30 of 33 in total

View Taxonomy