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L1_007_000G1_scaffold_1589

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_1589_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..394
DNA (393bp) protein (131aa)
orn; oligoribonuclease (EC:3.1.-.-)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Oligoribonuclease n=4 Tax=Bifidobacterium breve RepID=F6C6N3_BIFBA
L1_007_000G1_scaffold_1589_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

520..1938
DNA (1419bp) protein (473aa)
ATP-dependent endonuclease n=1 Tax=Bifidobacterium breve RepID=UPI00037FB079
Helicase
Helicase {ECO:0000313|EMBL:AHJ21632.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_000G1_scaffold_1589_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2262..3131
DNA (870bp) protein (290aa)
pyruvate formate lyase-activating protein n=1 Tax=Bifidobacterium breve RepID=UPI0002D9E8AB
Radical SAM domain protein {ECO:0000313|EMBL:EFE88704.1}; Uncharacterized protein {ECO:0000313|EMBL:BAR00544.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Pyruvate formate-lyase activating enzyme
L1_007_000G1_scaffold_1589_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3270..3638
DNA (369bp) protein (123aa)
proS; proline--tRNA ligase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
prolyl-tRNA synthetase n=1 Tax=Bifidobacterium breve RepID=UPI0003641939
Prolyl-tRNA synthetase suspected. See adjacent gene [L1_007_000G1_scaffold_1589_5].
L1_007_000G1_scaffold_1589_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


3635..4990
DNA (1356bp) protein (452aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Proline--tRNA ligase n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C6N0_BIFBA
Prolyl-tRNA synthetase
L1_007_000G1_scaffold_1589_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5253..5927
DNA (675bp) protein (225aa)
single-stranded DNA-binding protein n=1 Tax=Bifidobacterium breve RepID=UPI000306A10F
Single-strand DNA binding protein
Single-strand DNA binding protein {ECO:0000313|EMBL:ABE96138.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_000G1_scaffold_1589_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5997..8180)
DNA (2184bp) protein (728aa)
Peptidase {ECO:0000313|EMBL:BAR00541.1}; Peptidase family M13 {ECO:0000313|EMBL:EFE88707.1}; EC=3.4.24.- {ECO:0000313|EMBL:EFE88707.1};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Peptidase family M13 n=2 Tax=Bifidobacterium breve RepID=D4BR62_BIFBR
Zinc metalloprotease
L1_007_000G1_scaffold_1589_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8345..9229
DNA (885bp) protein (295aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=U2CS78_BIFBR
putative membrane spanning protein
Uncharacterized protein {ECO:0000313|EMBL:EPD75795.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_000G1_scaffold_1589_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9393..10175
DNA (783bp) protein (261aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Methionine aminopeptidase n=5 Tax=Bifidobacterium breve RepID=F6C6F2_BIFBA
Methionine aminopeptidase
L1_007_000G1_scaffold_1589_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10387..11679
DNA (1293bp) protein (431aa)
gltA; Citrate synthase (EC:2.3.3.1)
Citrate synthase n=2 Tax=Bifidobacterium breve RepID=D4BR67_BIFBR
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_000G1_scaffold_1589_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12054..13073)
DNA (1020bp) protein (340aa)
dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (EC:2.3.1.117)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_02122}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_02122};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_02122}; Tetrahydropicolinate succinylase {ECO:0000256|HAMAP-Rule:MF_02122}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=3 Tax=Bifidobacterium breve RepID=F9Y2Q1_BIFBU
L1_007_000G1_scaffold_1589_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13251..17327
DNA (4077bp) protein (1359aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZHA3_BIFBR
Helicase
Uncharacterized protein {ECO:0000313|EMBL:EPD75791.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_000G1_scaffold_1589_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17333..17896)
DNA (564bp) protein (188aa)
Acetyltransferase, GNAT family n=3 Tax=Bifidobacterium breve RepID=D4BR70_BIFBR
Acetyltransferase
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFE88715.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_000G1_scaffold_1589_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18051..18503
DNA (453bp) protein (151aa)
DNA mismatch endonuclease Vsr {ECO:0000313|EMBL:AEF28125.1}; EC=3.1.-.- {ECO:0000313|EMBL:AEF28125.1};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
DNA mismatch endonuclease Vsr n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C6E7_BIFBA
vsr; DNA mismatch endonuclease, patch repair protein
L1_007_000G1_scaffold_1589_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18583..19638)
DNA (1056bp) protein (352aa)
Oxidoreductase, NAD-binding domain protein n=2 Tax=Bifidobacterium breve RepID=D4BR72_BIFBR
NAD-dependent oxidoreductase
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EFE88717.1}; Putative oxidoreductase {ECO:0000313|EMBL:BAR00533.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_000G1_scaffold_1589_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19737..20948
DNA (1212bp) protein (404aa)
Aminotransferase (EC:2.6.1.-)
Aminotransferase, class I/II n=4 Tax=Bifidobacterium breve RepID=F6C6E5_BIFBA
Putative aminotransferase {ECO:0000313|EMBL:ERI87371.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_000G1_scaffold_1589_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21001..21969
DNA (969bp) protein (323aa)
Ppx/GppA phosphatase family protein n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C6E4_BIFBA
Ppx/GppA phosphatase family protein
Ppx/GppA phosphatase family protein {ECO:0000313|EMBL:AEF27606.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_007_000G1_scaffold_1589_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22003..23142)
DNA (1140bp) protein (380aa)
Endonuclease/exonuclease/phosphatase family protein n=2 Tax=Bifidobacterium breve RepID=F6C6E3_BIFBA
putative membrane spanning protein with Endonuclease/Exonuclease/phosphatase family domain
Putative membrane spanning protein with Endonuclease/Exonuclease/phosphatase family domain {ECO:0000313|EMBL:AHJ21618.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_000G1_scaffold_1589_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23497..23925
DNA (429bp) protein (143aa)
Nucleoside 2-deoxyribosyltransferase n=4 Tax=Bifidobacterium breve RepID=D4BR76_BIFBR
Hypothetical protein with nucleoside deoxyribosyltransferase (ntd) domain
Nucleoside 2-deoxyribosyltransferase {ECO:0000313|EMBL:EFE88721.1}; Putative nucleoside 2-deoxyribosyltransferase {ECO:0000313|EMBL:BAR00529.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_000G1_scaffold_1589_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24113..24619
DNA (507bp) protein (169aa)
Large-conductance mechanosensitive channel n=3 Tax=Bifidobacterium breve RepID=F9Y2P2_BIFBU
Large-conductance mechanosensitive channel
Large conductance mechanosensitive channel protein {ECO:0000313|EMBL:EPD75783.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_000G1_scaffold_1589_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24756..26612
DNA (1857bp) protein (619aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3A0T4_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD75782.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
long chain fatty acid CoA ligase
L1_007_000G1_scaffold_1589_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26748..27272)
DNA (525bp) protein (175aa)
Flavodoxin-like protein n=2 Tax=Bifidobacterium breve RepID=F6C6D9_BIFBA
NAD(P)H oxidoreductase
NAD(P)H oxidoreductase {ECO:0000313|EMBL:AHJ21614.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_000G1_scaffold_1589_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27339..27629)
DNA (291bp) protein (97aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L0U9_BIFBR
Exodeoxyribonuclease VII small subunit
L1_007_000G1_scaffold_1589_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27691..29046)
DNA (1356bp) protein (452aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Exodeoxyribonuclease 7 large subunit n=2 Tax=Bifidobacterium breve RepID=D4BR82_BIFBR
Exodeoxyribonuclease VII large subunit
L1_007_000G1_scaffold_1589_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29460..31868
DNA (2409bp) protein (803aa)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EFE88728.1}; EC=1.17.4.2 {ECO:0000313|EMBL:EFE88728.1};; Ribonucleoside triphosphate reductase {ECO:0000313|EMBL:BAR00523.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
nrdD; Anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=4 Tax=Bifidobacterium breve RepID=F6C6D6_BIFBA
L1_007_000G1_scaffold_1589_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32017..32739
DNA (723bp) protein (241aa)
Anaerobic ribonucleoside-triphosphate reductase activating protein {ECO:0000313|EMBL:EFE88729.1}; EC=1.97.1.4 {ECO:0000313|EMBL:EFE88729.1};; Ribonucleoside-triphosphate reductase activating protein {ECO:0000313|EMBL:BAR00522.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=2 Tax=Bifidobacterium breve RepID=D4BR84_BIFBR
Anaerobic ribonucleoside-triphosphate reductase activating protein
L1_007_000G1_scaffold_1589_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32966..33085
DNA (120bp) protein (40aa)
Putative CoA-substrate-specific enzyme activase n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C6D4_BIFBA
Activator of (R)-2-hydroxyglutaryl-CoA dehydratase
Activator of (R)-2-hydroxyglutaryl-CoA dehydratase {ECO:0000313|EMBL:AHJ21609.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Displaying 27 items

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