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L1_007_000G1_scaffold_2845

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000G1_scaffold_2845_1
unknown

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comp(3..68)
DNA (66bp) protein (22aa)
L1_007_000G1_scaffold_2845_2
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(160..420)
DNA (261bp) protein (87aa)
30S ribosomal protein S17 n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NVC8_9BIFI
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
30S ribosomal protein S17
L1_007_000G1_scaffold_2845_3
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(420..677)
DNA (258bp) protein (86aa)
50S ribosomal protein L29 n=2 Tax=Bifidobacterium RepID=B6XWV3_9BIFI
50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
L1_007_000G1_scaffold_2845_4
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(677..1096)
DNA (420bp) protein (140aa)
50S ribosomal protein L16 n=5 Tax=Bacteria RepID=RL16_BIFAA
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
L1_007_000G1_scaffold_2845_5
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1105..1908)
DNA (804bp) protein (268aa)
30S ribosomal protein S3 n=1 Tax=uncultured bacterium RepID=S6CPE7_9BACT
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
30S ribosomal protein S3
L1_007_000G1_scaffold_2845_6
Bifidobacterium ruminantium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1911..2270)
DNA (360bp) protein (120aa)
50S ribosomal protein L22 n=5 Tax=Bacteria RepID=RL22_BIFAA
50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=78346 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium ruminantium.;"
L1_007_000G1_scaffold_2845_7
Bifidobacterium ruminantium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(2287..2565)
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=11 Tax=root RepID=RS19_BIFAA
rpsS; 30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=78346 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium ruminantium.;"
L1_007_000G1_scaffold_2845_8
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(2581..3411)
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=3 Tax=Bifidobacterium RepID=B6XWV8_9BIFI
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
50S ribosomal protein L2
L1_007_000G1_scaffold_2845_9

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comp(3448..3744)
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=10 Tax=Bacteria RepID=A1A071_BIFAA
50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
L1_007_000G1_scaffold_2845_10
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3750..4415)
DNA (666bp) protein (222aa)
50S ribosomal protein L4 n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NRE6_9BIFI
50S ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
L1_007_000G1_scaffold_2845_11
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(4422..5063)
DNA (642bp) protein (214aa)
50S ribosomal protein L3 n=3 Tax=Bifidobacterium RepID=B6XWW1_9BIFI
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
rplC; 50S ribosomal protein L3
L1_007_000G1_scaffold_2845_12
Gardnerella vaginalis, Gardnerella, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(5081..5389)
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=41 Tax=Bacteria RepID=D2Q8G9_BIFDB
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1261060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella.;" source="Gardnerella vaginalis JCP7672.;"
L1_007_000G1_scaffold_2845_13
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5867..8596)
DNA (2730bp) protein (910aa)
Aldehyde dehydrogenase (NAD) family protein n=2 Tax=Bifidobacterium RepID=C0BQI3_9BIFI
Aldehyde-alcohol dehydrogenase {ECO:0000256|PIRNR:PIRNR000111}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
acetaldehyde dehydrogenase
L1_007_000G1_scaffold_2845_14
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8950..9921)
DNA (972bp) protein (324aa)
Transcriptional regulator, AraC family n=2 Tax=Bifidobacterium RepID=C0BQI4_9BIFI
Putative transcriptional regulator {ECO:0000313|EMBL:BAR03012.1}; Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEG71747.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
transcriptional regulator
L1_007_000G1_scaffold_2845_15
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9961..11001)
DNA (1041bp) protein (347aa)
GroES-like protein n=2 Tax=Bifidobacterium RepID=C0BQI5_9BIFI
xylitol (sorbitol) dehydrogenase
Sulfurtransferase {ECO:0000313|EMBL:KEF28894.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
L1_007_000G1_scaffold_2845_16
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11075..12406)
DNA (1332bp) protein (444aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQI6_9BIFI
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEG71749.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
rbtT; hypothetical protein
L1_007_000G1_scaffold_2845_17
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12561..13691
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NU36_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14745.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
NagC family transcriptional regulator
L1_007_000G1_scaffold_2845_18
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13860..14261)
DNA (402bp) protein (134aa)
Glyoxalase family protein n=2 Tax=Bifidobacterium RepID=C0BQI8_9BIFI
Glyoxalase family protein {ECO:0000313|EMBL:EEG71751.1}; Lyase {ECO:0000313|EMBL:BAR03008.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
hypothetical protein
L1_007_000G1_scaffold_2845_19
unknown

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comp(14322..14813)
DNA (492bp) protein (164aa)
cytochrome C biogenesis protein CcdA
Displaying 19 items

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