ggKbase home page

L1_007_000M1_scaffold_1112

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1112_1
unknown

Not on your lists

3..221
DNA (219bp) protein (73aa)

This feature has no annotations

L1_007_000M1_scaffold_1112_2
unknown

Not on your lists

305..2011
DNA (1707bp) protein (569aa)

This feature has no annotations

L1_007_000M1_scaffold_1112_3
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2142..3440
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:156 RepID=R5ZJK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA29057.1}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
L1_007_000M1_scaffold_1112_4
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3501..4784
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:156 RepID=R5Z4S4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA29056.1}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
hypothetical protein
L1_007_000M1_scaffold_1112_5
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

4887..5828
DNA (942bp) protein (314aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
[Acyl-carrier-protein] S-malonyltransferase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MWM4_9FIRM
L1_007_000M1_scaffold_1112_6
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

5918..6670
DNA (753bp) protein (251aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKU2_9FIRM
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:CDC00273.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
3-oxoacyl-(acyl-carrier-protein) reductase
L1_007_000M1_scaffold_1112_7
Clostridium sp. CAG:780, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6740..6973
DNA (234bp) protein (78aa)
Acyl carrier protein n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VN39_CLOSH
acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1262839 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:780.;"
L1_007_000M1_scaffold_1112_8
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7196..8434
DNA (1239bp) protein (413aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LZ09_CLOCD
beta-ketoacyl-acyl-carrier-protein synthase II
L1_007_000M1_scaffold_1112_9
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8508..9521
DNA (1014bp) protein (338aa)
GCN5-related N-acetyltransferase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JQ04_CELLD
GCN5-related N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADZ84939.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L1_007_000M1_scaffold_1112_10
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9511..10179
DNA (669bp) protein (223aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Clostridium sp. CAG:242 RepID=R6CS50_9CLOT
L1_007_000M1_scaffold_1112_11
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

10182..11159
DNA (978bp) protein (326aa)
Oxygen-independent coproporphyrinogen-III oxidase 2 {ECO:0000313|EMBL:CRH74457.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CRH74457.1};; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
Radical SAM domain protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MWL8_9FIRM
radical SAM protein
L1_007_000M1_scaffold_1112_12
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11164..11709
DNA (546bp) protein (182aa)
Uncharacterized protein n=2 Tax=root RepID=A5Z8R1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM50784.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
hypothetical protein
L1_007_000M1_scaffold_1112_13
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11778..12962)
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI00037A885D
copper amine oxidase domain-containing protein
Tax=BJP_IG2158_Thermincola_46_17
L1_007_000M1_scaffold_1112_14
Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

13272..15962
DNA (2691bp) protein (897aa)
hypothetical protein n=1 Tax=Paenibacillus fonticola RepID=UPI000382BEDD
pectinesterase
Pectinesterase {ECO:0000313|EMBL:ADQ45070.1}; TaxID=632348 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 /; 2002).;"
L1_007_000M1_scaffold_1112_15
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16086..17399
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VM68_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KGJ50565.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
hypothetical protein
L1_007_000M1_scaffold_1112_16
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17565..18023
DNA (459bp) protein (153aa)
Transcriptional repressor NrdR n=7 Tax=Clostridium thermocellum RepID=NRDR_CLOTH
ATP-cone domain-containing protein
Transcriptional repressor NrdR {ECO:0000255|HAMAP-Rule:MF_00440}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L1_007_000M1_scaffold_1112_17
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18235..23781
DNA (5547bp) protein (1849aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GH89_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO39044.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L1_007_000M1_scaffold_1112_18
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23981..24454
DNA (474bp) protein (158aa)
Ribosome maturation factor RimP n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LZU2_CLOCD
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L1_007_000M1_scaffold_1112_19
Halanaerobium hydrogeniformans, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24534..25676
DNA (1143bp) protein (381aa)
NusA antitermination factor n=1 Tax=Halanaerobium hydrogeniformans RepID=E4RKT8_HALHG
NusA antitermination factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=656519 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halanaerobium.;" source="Halanaerobium hydrogeniformans (Halanaerobium sp. (strain; sapolanicus)).;"
L1_007_000M1_scaffold_1112_20
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25699..25944
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XR92_9CLOT
Nucleic-acid-binding protein implicated in transcription termination {ECO:0000313|EMBL:KHS56635.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
ylxR; YlxR
L1_007_000M1_scaffold_1112_21
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25941..26258
DNA (318bp) protein (106aa)
Ribosomal protein L7Ae n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZB6_9FIRM
Ribosomal protein L7Ae {ECO:0000313|EMBL:EEA85119.1}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
ribosomal protein L7Ae/L30e/S12e/Gadd45
L1_007_000M1_scaffold_1112_22
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26388..28535
DNA (2148bp) protein (716aa)
Translation initiation factor IF-2 n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VSE1_9CLOT
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
translation initiation factor IF-2
L1_007_000M1_scaffold_1112_23
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

28572..28910
DNA (339bp) protein (113aa)
Ribosome-binding factor A n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MHX4_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
ribosome-binding factor A
L1_007_000M1_scaffold_1112_24
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28953..29909
DNA (957bp) protein (319aa)
Exopolyphosphatase-like enzyme n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LZT6_CLOCD
exopolyphosphatase-like protein
Exopolyphosphatase-like enzyme {ECO:0000313|EMBL:AEV69026.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L1_007_000M1_scaffold_1112_25
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

29897..30805
DNA (909bp) protein (303aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MMS8_9FIRM
L1_007_000M1_scaffold_1112_26
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30820..31761
DNA (942bp) protein (314aa)
ribC; riboflavin biosynthesis protein RibC (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Riboflavin biosynthesis protein RibC n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MJW1_9CLOT
L1_007_000M1_scaffold_1112_27
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31833..33215
DNA (1383bp) protein (461aa)
Putative efflux protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7R1Y4_9FIRM
Putative efflux protein {ECO:0000313|EMBL:CDF43736.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
MATE efflux family protein
L1_007_000M1_scaffold_1112_28
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33550..35382
DNA (1833bp) protein (611aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C235_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG74199.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L1_007_000M1_scaffold_1112_29
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35446..37212)
DNA (1767bp) protein (589aa)
Na/Pi-cotransporter II-related protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KP15_CLOPH
Na/Pi-cotransporter II-related protein
Na/Pi-cotransporter II-related protein {ECO:0000313|EMBL:ABX43185.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L1_007_000M1_scaffold_1112_30
Methanococcus aeolicus, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(37467..38885)
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) RepID=A6UWQ2_META3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR56924.1}; TaxID=419665 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.;" source="Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280).;"
Displaying items 1-30 of 33 in total

View Taxonomy