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L1_007_000M1_scaffold_1170

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1170_1
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..503
DNA (501bp) protein (167aa)
Conjugative transposon protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VLI6_9FIRM
Conjugative transposon protein {ECO:0000313|EMBL:EFV16269.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
hypothetical protein
L1_007_000M1_scaffold_1170_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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720..1394
DNA (675bp) protein (225aa)
Response regulator receiver domain protein n=2 Tax=Clostridiales RepID=C7GC64_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EEV00708.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_000M1_scaffold_1170_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1382..2716
DNA (1335bp) protein (445aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Uncharacterized protein n=2 Tax=Clostridiales RepID=C6J951_9FIRM
Integral membrane sensor signal transduction histidine kinase
L1_007_000M1_scaffold_1170_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2767..3279
DNA (513bp) protein (171aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=C6J950_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78852.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L1_007_000M1_scaffold_1170_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3299..3472
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J949_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78851.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L1_007_000M1_scaffold_1170_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3581..3937)
DNA (357bp) protein (119aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=C6J948_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEV00705.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Helix-turn-helix.
L1_007_000M1_scaffold_1170_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4500..4919
DNA (420bp) protein (140aa)
DNA-directed RNA polymerase specialized sigma subunit n=3 Tax=Clostridiales RepID=D4LX51_9FIRM
DNA-directed RNA polymerase specialized sigma subunit
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EES78849.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L1_007_000M1_scaffold_1170_8
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4921..5160
DNA (240bp) protein (80aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=C6J946_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD66227.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
L1_007_000M1_scaffold_1170_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5544..5687
DNA (144bp) protein (48aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=C6J945_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78847.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L1_007_000M1_scaffold_1170_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5769..7337
DNA (1569bp) protein (523aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=C6J944_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EEV00700.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_007_000M1_scaffold_1170_11
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7746..8669
DNA (924bp) protein (308aa)
Resolvase N-terminal domain protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GIV4_9FIRM
Resolvase N-terminal domain protein {ECO:0000313|EMBL:CCY12762.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
site-specific recombinase, DNA invertase Pin
L1_007_000M1_scaffold_1170_12
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8741..8881
DNA (141bp) protein (47aa)
Predicted AAA-ATPase n=1 Tax=Eubacterium sp. CAG:146 RepID=R5G6H5_9FIRM
Predicted AAA-ATPase {ECO:0000313|EMBL:CCY12763.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
Predicted AAA-ATPase.
L1_007_000M1_scaffold_1170_13
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8878..9024
DNA (147bp) protein (49aa)
Predicted AAA-ATPase n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GA28_9FIRM
Predicted AAA-ATPase {ECO:0000313|EMBL:CCY12764.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L1_007_000M1_scaffold_1170_14
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9082..9237
DNA (156bp) protein (52aa)
Uncharacterized protein n=2 Tax=environmental samples RepID=R5G631_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB18252.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
hypothetical protein
L1_007_000M1_scaffold_1170_15
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9607..10587
DNA (981bp) protein (327aa)
Sugar-binding domain protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6GAD1_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:CDB18251.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L1_007_000M1_scaffold_1170_16
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10597..11916
DNA (1320bp) protein (440aa)
Signal transduction histidine kinase (EC:2.7.13.3)
Histidine kinase n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GIV7_9FIRM
Histidine kinase {ECO:0000313|EMBL:CCY12767.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
L1_007_000M1_scaffold_1170_17
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11913..12578
DNA (666bp) protein (222aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Eubacterium hallii CAG:12 RepID=R6G9I2_9FIRM
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:CDB18249.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
L1_007_000M1_scaffold_1170_18
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12584..13909
DNA (1326bp) protein (442aa)
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) n=1 Tax=Eubacterium sp. CAG:146 RepID=R5G636_9FIRM
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CCY12770.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L1_007_000M1_scaffold_1170_19
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14096..14530
DNA (435bp) protein (145aa)
Phosphotransferase system, mannose/fructose-specific component IIA (EC:2.7.1.69)
PTS system fructose IIA component n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GJP8_9FIRM
PTS system fructose IIA component {ECO:0000313|EMBL:CCY12771.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
L1_007_000M1_scaffold_1170_20
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14636..15133
DNA (498bp) protein (166aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB (EC:2.7.1.69)
Phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIB n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GIW2_9FIRM
Phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIB {ECO:0000313|EMBL:CCY12772.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
L1_007_000M1_scaffold_1170_21
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15210..16067
DNA (858bp) protein (286aa)
PTS system sorbose-specific iic component n=2 Tax=environmental samples RepID=R5G6I5_9FIRM
PTS system sorbose-specific iic component {ECO:0000313|EMBL:CDB18245.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
L1_007_000M1_scaffold_1170_22
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16070..16906
DNA (837bp) protein (279aa)
PTS system IID component Man family (TC 4.A.6) n=2 Tax=environmental samples RepID=R5GA38_9FIRM
PTS system IID component Man family (TC 4.A.6) {ECO:0000313|EMBL:CDB18244.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
PTS system IID component, Man family (TC 4.A.6)
L1_007_000M1_scaffold_1170_23
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16923..17207
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=environmental samples RepID=R5G641_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB18243.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
hypothetical protein
L1_007_000M1_scaffold_1170_24
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17429..18292
DNA (864bp) protein (288aa)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen (EC:3.6.1.-)
Putative transcriptional regulator n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GJQ3_9FIRM
Putative transcriptional regulator {ECO:0000313|EMBL:CCY12776.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
L1_007_000M1_scaffold_1170_25
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18500..20479
DNA (1980bp) protein (660aa)
Calcineurin-like phosphoesterase n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GIW7_9FIRM
Calcineurin-like phosphoesterase {ECO:0000313|EMBL:CCY12777.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
Calcineurin-like phosphoesterase.
L1_007_000M1_scaffold_1170_26
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20546..21706
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5G6I9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY12778.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
archaeal flagellin N-terminal-like domain
L1_007_000M1_scaffold_1170_27
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21756..21881
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GA42_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY12779.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
L1_007_000M1_scaffold_1170_28
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22094..23134
DNA (1041bp) protein (347aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
ABC transporter ATP-binding protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5G647_9FIRM
ABC-type metal ion transport system, ATPase component
L1_007_000M1_scaffold_1170_29
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23124..23783
DNA (660bp) protein (220aa)
ABC transporter permease protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GJQ7_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CCY12781.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
ABC-type metal ion transport system, permease component
L1_007_000M1_scaffold_1170_30
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24119..24946
DNA (828bp) protein (276aa)
Lipoprotein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GIX2_9FIRM
Lipoprotein {ECO:0000256|PIRNR:PIRNR002854}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
ABC-type metal ion transport system, periplasmic component/surface antigen
Displaying items 1-30 of 59 in total

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