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L1_007_000M1_scaffold_1228

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1228_1
unknown

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comp(1..72)
DNA (72bp) protein (24aa)

This feature has no annotations

L1_007_000M1_scaffold_1228_2
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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184..903
DNA (720bp) protein (240aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCF9_9FIRM
L1_007_000M1_scaffold_1228_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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906..4052
DNA (3147bp) protein (1049aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JUH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ89936.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Glycoside Hydrolase Family 59 protein (possibly a Galactocerebrosidase)
L1_007_000M1_scaffold_1228_4
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4018..5439
DNA (1422bp) protein (474aa)
Putative HTH-type transcriptional regulatory protein GabR n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCT3_9FIRM
Putative HTH-type transcriptional regulatory protein GabR {ECO:0000313|EMBL:ERJ89935.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
transcriptional regulator
L1_007_000M1_scaffold_1228_5
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6048..8318
DNA (2271bp) protein (757aa)
ATPase family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LS42_9FIRM
ATPase family protein {ECO:0000313|EMBL:ERJ89933.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ATPases with chaperone activity, ATP-binding subunit
L1_007_000M1_scaffold_1228_6
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8516..9013)
DNA (498bp) protein (166aa)
HD domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LS70_9FIRM
HD domain protein {ECO:0000313|EMBL:ERJ89963.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
HD family phosphohydrolase
L1_007_000M1_scaffold_1228_7
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9110..10138)
DNA (1029bp) protein (343aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JUK5_9FIRM
L1_007_000M1_scaffold_1228_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10298..11584)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ89960.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L1_007_000M1_scaffold_1228_9
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11642..12502)
DNA (861bp) protein (287aa)
PHP domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKD3_9FIRM
PHP domain protein {ECO:0000313|EMBL:ERJ89959.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
phosphotransferase domain-containing protein
L1_007_000M1_scaffold_1228_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12499..13656)
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LS65_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ89958.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L1_007_000M1_scaffold_1228_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13666..15042)
DNA (1377bp) protein (459aa)
MBOAT family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCH9_9FIRM
MBOAT family protein {ECO:0000313|EMBL:ERJ89957.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted membrane protein involved in D-alanine export
L1_007_000M1_scaffold_1228_12
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15058..15633)
DNA (576bp) protein (192aa)
RNAse M5 (EC:3.1.26.8)
Putative ribonuclease M5 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JUK0_9FIRM
Putative ribonuclease M5 {ECO:0000313|EMBL:ERJ89956.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L1_007_000M1_scaffold_1228_13
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15602..16681)
DNA (1080bp) protein (360aa)
DNA polymerase III, delta subunit n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCV4_9FIRM
DNA polymerase III, delta subunit {ECO:0000313|EMBL:ERJ89955.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
DNA polymerase III, delta subunit
L1_007_000M1_scaffold_1228_14
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16779..18845)
DNA (2067bp) protein (689aa)
ComEC/Rec2-like protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LS60_9FIRM
ComEC/Rec2-like protein {ECO:0000313|EMBL:ERJ89953.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
possible DNA uptake protein
L1_007_000M1_scaffold_1228_15
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18859..19401)
DNA (543bp) protein (181aa)
Phosphoribosyl transferase domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCH5_9FIRM
Phosphoribosyl transferase domain protein {ECO:0000313|EMBL:ERJ89952.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
phosphoribosyltransferase
L1_007_000M1_scaffold_1228_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19415..19777)
DNA (363bp) protein (121aa)
Histidine triad domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JUJ3_9FIRM
Histidine triad domain protein {ECO:0000313|EMBL:ERJ89951.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
L1_007_000M1_scaffold_1228_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19780..22425)
DNA (2646bp) protein (882aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCU8_9FIRM
L1_007_000M1_scaffold_1228_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23103..24254)
DNA (1152bp) protein (384aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCH0_9FIRM
Ribose-phosphate diphosphokinase {ECO:0000313|EMBL:ERJ89947.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L1_007_000M1_scaffold_1228_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24343..24876)
DNA (534bp) protein (178aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Inorganic pyrophosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JUI8_9FIRM
L1_007_000M1_scaffold_1228_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25220..26158
DNA (939bp) protein (313aa)
MoxR-like ATPases (EC:3.6.3.-)
ATPase family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKB9_9FIRM
ATPase family protein {ECO:0000313|EMBL:ERJ89944.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L1_007_000M1_scaffold_1228_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26155..27282
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LS51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ89943.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L1_007_000M1_scaffold_1228_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27279..29906
DNA (2628bp) protein (876aa)
Transglutaminase-like protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCG5_9FIRM
Transglutaminase-like protein {ECO:0000313|EMBL:ERJ89942.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Transglutaminase-like enzymes, putative cysteine proteases
L1_007_000M1_scaffold_1228_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29988..30758
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JV18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ90106.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L1_007_000M1_scaffold_1228_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30775..31551
DNA (777bp) protein (259aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDC4_9FIRM
Histidinol phosphate phosphatase HisJ family protein {ECO:0000313|EMBL:ERJ90105.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L1_007_000M1_scaffold_1228_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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31717..31917
DNA (201bp) protein (67aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKU5_9FIRM
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:ERJ90104.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
sulfur carrier protein ThiS
L1_007_000M1_scaffold_1228_26
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31957..32736
DNA (780bp) protein (260aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Thiazole synthase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LSM3_9FIRM
thiG; putative thiazole biosynthesis protein ThiG
L1_007_000M1_scaffold_1228_27
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32749..33915
DNA (1167bp) protein (389aa)
thiH2; 2-iminoacetate synthase ThiH (EC:4.1.99.19)
Thiazole biosynthesis protein ThiH n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCZ4_9FIRM
Thiazole biosynthesis protein ThiH {ECO:0000313|EMBL:ERJ90102.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L1_007_000M1_scaffold_1228_28
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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33912..34502
DNA (591bp) protein (197aa)
Putative thiamine-phosphate diphosphorylase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JV16_9FIRM
Putative thiamine-phosphate diphosphorylase {ECO:0000313|EMBL:ERJ90101.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L1_007_000M1_scaffold_1228_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34499..35185
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ90100.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted membrane protein
L1_007_000M1_scaffold_1228_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35301..36590)
DNA (1290bp) protein (430aa)
ATP-dependent Clp protease ATP-binding subunit ClpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKU2_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Displaying items 1-30 of 52 in total

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