ggKbase home page

L1_007_000M1_scaffold_1504

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1504_1
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..172)
DNA (171bp) protein (57aa)
Putative uncharacterized protein n=3 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WXH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX74448.1}; Flags: Fragment;; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
transposase
L1_007_000M1_scaffold_1504_2
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(601..1386)
DNA (786bp) protein (262aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Putative GTP cyclohydrolase 1 type 2 n=2 Tax=Clostridiales RepID=D4M5D0_9FIRM
conserved hypothetical protein TIGR00486
L1_007_000M1_scaffold_1504_3
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1376..2101)
DNA (726bp) protein (242aa)
Predicted SAM-dependent methyltransferase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PX39_9FIRM
Predicted SAM-dependent methyltransferase {ECO:0000313|EMBL:CDC14327.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted SAM-dependent methyltransferase
L1_007_000M1_scaffold_1504_4
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2101..3222)
DNA (1122bp) protein (374aa)
RNA polymerase sigma factor SigA n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P735_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
RNA polymerase, sigma 70 subunit, RpoD
L1_007_000M1_scaffold_1504_5
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3279..5057)
DNA (1779bp) protein (593aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSX9_9FIRM
L1_007_000M1_scaffold_1504_6
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5757..6113)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5C6_9FIRM
LSU ribosomal protein L20P
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_1504_7
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6147..6344)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5C5_9FIRM
LSU ribosomal protein L35P
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_1504_8
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6403..6897)
DNA (495bp) protein (165aa)
Translation initiation factor IF-3 n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P0B2_9FIRM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
bacterial translation initiation factor 3 (bIF-3)
L1_007_000M1_scaffold_1504_9
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7181..8044)
DNA (864bp) protein (288aa)
EDD domain protein DegV family n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PY41_9FIRM
EDD domain protein DegV family {ECO:0000313|EMBL:CDC14632.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
EDD domain protein, DegV family
L1_007_000M1_scaffold_1504_10
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8191..9558)
DNA (1368bp) protein (456aa)
Bacillus/Clostridium GerA spore germination protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P7X3_9FIRM
Bacillus/Clostridium GerA spore germination protein.
Bacillus/Clostridium GerA spore germination protein {ECO:0000313|EMBL:CDC14631.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_1504_11
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9650..10168)
DNA (519bp) protein (173aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NTS2_9FIRM
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000313|EMBL:CDC14630.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_1504_12
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10526..10768
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P1S6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14629.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_1504_13
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10765..11031
DNA (267bp) protein (89aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R6NR16_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14628.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_1504_14
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11170..12090)
DNA (921bp) protein (307aa)
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Homoserine O-succinyltransferase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5B8_9FIRM
L1_007_000M1_scaffold_1504_15
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12068..13471)
DNA (1404bp) protein (468aa)
Predicted permease n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P201_9FIRM
Predicted permease {ECO:0000313|EMBL:CDC17470.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted permease
L1_007_000M1_scaffold_1504_16
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13623..13952)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P9S8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC17469.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Domain of Unknown Function (DUF1540).
L1_007_000M1_scaffold_1504_17
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14081..14596)
DNA (516bp) protein (172aa)
Predicted metal-binding protein related to the C-terminal domain of SecA n=2 Tax=Clostridiales RepID=D4M5B5_9FIRM
Predicted metal-binding protein related to the C-terminal domain of SecA
Predicted metal-binding protein related to the C-terminal domain of SecA {ECO:0000313|EMBL:CDC17468.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_1504_18
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14735..14956
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q695_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC17467.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_1504_19
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14947..15102)
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PG75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC17466.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_1504_20
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15532..16812)
DNA (1281bp) protein (427aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P1Z7_9FIRM
L1_007_000M1_scaffold_1504_21
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17066..17398
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P9S2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC17464.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_1504_22
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17492..18895)
DNA (1404bp) protein (468aa)
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NZA2_9FIRM
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs {ECO:0000313|EMBL:CDC17463.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
L1_007_000M1_scaffold_1504_23
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18979..20649)
DNA (1671bp) protein (557aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=2 Tax=Clostridiales RepID=D4M5B0_9FIRM
L1_007_000M1_scaffold_1504_24
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20961..21695)
DNA (735bp) protein (245aa)
ADP-ribose pyrophosphatase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PG69_9FIRM
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:CDC17461.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
ADP-ribose pyrophosphatase
L1_007_000M1_scaffold_1504_25
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21740..22399)
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5A8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL26420.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_1504_26
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22465..22911)
DNA (447bp) protein (149aa)
D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160974}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160970};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
D-tyrosyl-tRNA(Tyr) deacylase n=2 Tax=Clostridiales RepID=D4M564_9FIRM
L1_007_000M1_scaffold_1504_27
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22916..23758)
DNA (843bp) protein (281aa)
CAAX amino terminal protease family n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NZ95_9FIRM
CAAX amino terminal protease family {ECO:0000313|EMBL:CDC17458.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
CAAX amino terminal protease family.
L1_007_000M1_scaffold_1504_28
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23772..24383)
DNA (612bp) protein (204aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q686_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
RNA polymerase, sigma 30 subunit, SigH
L1_007_000M1_scaffold_1504_29
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24430..25194)
DNA (765bp) protein (255aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
rRNA methylase, putative, group 3 {ECO:0000313|EMBL:CBL26373.1}; EC=2.1.1.- {ECO:0000313|EMBL:CBL26373.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
rRNA methylase, putative, group 3 n=1 Tax=Ruminococcus torques L2-14 RepID=D4M561_9FIRM
L1_007_000M1_scaffold_1504_30
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25181..25657)
DNA (477bp) protein (159aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Mini-ribonuclease 3 n=2 Tax=Clostridiales RepID=D4M560_9FIRM
hypothetical protein
Displaying items 1-30 of 35 in total

View Taxonomy