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L1_007_000M1_scaffold_1544

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1544_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(107..1543)
-----------------
DNA (1437bp)
protein (479aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KYT9_9FIRM
integral membrane sensor signal transduction histidine kinase
L1_007_000M1_scaffold_1544_2
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1612..2310)
-----------------
DNA (699bp)
protein (233aa)
Putative transcriptional regulatory protein ResD n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MDU0_9FIRM
Putative transcriptional regulatory protein ResD {ECO:0000313|EMBL:ERJ97463.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_000M1_scaffold_1544_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2816..3106
-----------------
DNA (291bp)
protein (97aa)
10 kDa chaperonin n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KG01_9FIRM
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Heat shock protein 60 family co-chaperone GroES
L1_007_000M1_scaffold_1544_4
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3155..4786
-----------------
DNA (1632bp)
protein (544aa)
60 kDa chaperonin n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KYU7_9FIRM
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
chaperonin GroL
L1_007_000M1_scaffold_1544_5
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4954..6357)
-----------------
DNA (1404bp)
protein (468aa)
ABC transporter, solute-binding protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MDU5_9FIRM
ABC transporter, solute-binding protein {ECO:0000313|EMBL:ERJ97468.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ABC-type sugar transport system, periplasmic component
L1_007_000M1_scaffold_1544_6
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6725..8341
-----------------
DNA (1617bp)
protein (539aa)
Dockerin type I repeat-containing domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M6U7_9FIRM
Dockerin type I repeat-containing domain protein {ECO:0000313|EMBL:ERJ97469.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Carbohydrate binding module (family 6).
L1_007_000M1_scaffold_1544_7
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8421..8876)
-----------------
DNA (456bp)
protein (152aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FFT7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE12567.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
hypothetical protein
L1_007_000M1_scaffold_1544_8
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8889..9329)
-----------------
DNA (441bp)
protein (147aa)
Response regulator receiver protein n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FD22_9FIRM
Response regulator receiver protein {ECO:0000313|EMBL:CDE12566.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
response regulator receiver protein
L1_007_000M1_scaffold_1544_9
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9606..10880
-----------------
DNA (1275bp)
protein (425aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K5N1_9FIRM
L1_007_000M1_scaffold_1544_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11330..12565
-----------------
DNA (1236bp)
protein (412aa)
RmuC domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KNZ1_9FIRM
RmuC domain protein {ECO:0000313|EMBL:ERJ93790.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L1_007_000M1_scaffold_1544_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12684..13988)
-----------------
DNA (1305bp)
protein (435aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K5K9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93791.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
permease
L1_007_000M1_scaffold_1544_12
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14282..16675)
-----------------
DNA (2394bp)
protein (798aa)
metH; Methionine synthase (EC:2.1.1.13)
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M379_9FIRM
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:ERJ93793.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L1_007_000M1_scaffold_1544_13
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16714..17199)
-----------------
DNA (486bp)
protein (162aa)
Acetyltransferase, GNAT family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LWD1_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ERJ93794.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
N-acetyltransferase
L1_007_000M1_scaffold_1544_14
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17299..17964)
-----------------
DNA (666bp)
protein (222aa)
Vitamin B12 dependent methionine synthase, activation domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KNZ6_9FIRM
Vitamin B12 dependent methionine synthase, activation domain protein {ECO:0000313|EMBL:ERJ93795.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Vitamin B12 dependent methionine synthase activation region
L1_007_000M1_scaffold_1544_15
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17958..18833)
-----------------
DNA (876bp)
protein (292aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
5,10-methylenetetrahydrofolate reductase, prokaryotic form (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K5L5_9FIRM
L1_007_000M1_scaffold_1544_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18968..20590)
-----------------
DNA (1623bp)
protein (541aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KND4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93797.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L1_007_000M1_scaffold_1544_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20592..21299)
-----------------
DNA (708bp)
protein (236aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M384_9FIRM
L1_007_000M1_scaffold_1544_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21587..23011
-----------------
DNA (1425bp)
protein (475aa)
Protein translocase subunit SecD n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KP00_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93800.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
secD; Protein-export membrane protein SecD
L1_007_000M1_scaffold_1544_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22995..23996
-----------------
DNA (1002bp)
protein (334aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K5M1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93801.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
protein-export membrane protein SecF
L1_007_000M1_scaffold_1544_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24221..25015
-----------------
DNA (795bp)
protein (265aa)
AP endonuclease, family 2 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KNE1_9FIRM
AP endonuclease, family 2 {ECO:0000313|EMBL:ERJ93802.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Sugar phosphate isomerases/epimerases
L1_007_000M1_scaffold_1544_21
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25072..25527
-----------------
DNA (456bp)
protein (152aa)
Transcriptional repressor NrdR n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FB48_9FIRM
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
transcriptional regulator NrdR
L1_007_000M1_scaffold_1544_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25568..25948
-----------------
DNA (381bp)
protein (127aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LWE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93804.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted membrane protein
L1_007_000M1_scaffold_1544_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25949..26386)
-----------------
DNA (438bp)
protein (146aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KP04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93805.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L1_007_000M1_scaffold_1544_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26464..27219
-----------------
DNA (756bp)
protein (252aa)
rsuA; Ribosomal small subunit pseudouridine synthase A (EC:5.4.99.12)
Putative 16S pseudouridylate synthase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K5M6_9FIRM
Putative 16S pseudouridylate synthase {ECO:0000313|EMBL:ERJ93806.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L1_007_000M1_scaffold_1544_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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27365..28501
-----------------
DNA (1137bp)
protein (379aa)
ABC transporter, ATP-binding protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KNE5_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERJ93807.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)
L1_007_000M1_scaffold_1544_26
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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29243..29638
-----------------
DNA (396bp)
protein (132aa)
Secondary thiamine-phosphate synthase enzyme n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWX9_9FIRM
Secondary thiamine-phosphate synthase enzyme {ECO:0000313|EMBL:ERJ96575.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
thiamine-phosphate synthase
L1_007_000M1_scaffold_1544_27
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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29654..30394
-----------------
DNA (741bp)
protein (247aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
NAD-dependent protein deacetylase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M4B3_9FIRM
L1_007_000M1_scaffold_1544_28
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30391..30846
-----------------
DNA (456bp)
protein (152aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MBB4_9FIRM
L1_007_000M1_scaffold_1544_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31730..33022
-----------------
DNA (1293bp)
protein (431aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KY60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ97025.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L1_007_000M1_scaffold_1544_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33197..34831
-----------------
DNA (1635bp)
protein (545aa)
Serine protease do-like HtrA family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M5L4_9FIRM
Serine protease do-like HtrA family protein {ECO:0000313|EMBL:ERJ97024.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Displaying items 1-30 of 33 in total

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