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L1_007_000M1_scaffold_1552

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1552_1
unknown

Not on your lists

comp(2..691)
DNA (690bp) protein (230aa)

This feature has no annotations

L1_007_000M1_scaffold_1552_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(942..2345)
DNA (1404bp) protein (468aa)
FAD dependent oxidoreductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIE5_9FIRM
FAD dependent oxidoreductase {ECO:0000313|EMBL:EFB77530.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterized FAD-dependent dehydrogenases
L1_007_000M1_scaffold_1552_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2333..3133)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77531.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1552_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3171..3779)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77532.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1552_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3988..4881)
DNA (894bp) protein (298aa)
SPFH/Band 7/PHB domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNP0_9FIRM
SPFH/Band 7/PHB domain protein {ECO:0000313|EMBL:EFB76175.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Membrane protease subunits, stomatin/prohibitin homologs
L1_007_000M1_scaffold_1552_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4900..5349)
DNA (450bp) protein (150aa)
Nodulation efficiency protein D n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNP1_9FIRM
Nodulation efficiency protein D {ECO:0000313|EMBL:EFB76176.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Membrane protein implicated in regulation of membrane protease activity
L1_007_000M1_scaffold_1552_7
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5431..5865)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P1N5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97927.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L1_007_000M1_scaffold_1552_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5932..7083
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77540.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1552_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7207..8385
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIF6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77541.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
permease
L1_007_000M1_scaffold_1552_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8605..12045)
DNA (3441bp) protein (1147aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN58_9FIRM
L1_007_000M1_scaffold_1552_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12117..12647)
DNA (531bp) protein (177aa)
SH3 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN55_9FIRM
SH3 domain protein {ECO:0000313|EMBL:EFB75990.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_1552_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12661..13248)
DNA (588bp) protein (196aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN54_9FIRM
L1_007_000M1_scaffold_1552_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13374..14108)
DNA (735bp) protein (245aa)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN51_9FIRM
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EFB75986.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1552_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14512..16923
DNA (2412bp) protein (804aa)
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EFB75984.1}; EC=2.7.9.1 {ECO:0000313|EMBL:EFB75984.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN49_9FIRM
L1_007_000M1_scaffold_1552_15
unknown

Not on your lists

17213..17344
DNA (132bp) protein (44aa)

This feature has no annotations

L1_007_000M1_scaffold_1552_16
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17731..18483
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2EVH4_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:ERI98857.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L1_007_000M1_scaffold_1552_17
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18339..18977)
DNA (639bp) protein (213aa)
Site-specific recombinase phage integrase family n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QJ26_9FIRM
Site-specific recombinase phage integrase family {ECO:0000313|EMBL:CDC30896.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Site-specific recombinase XerD
L1_007_000M1_scaffold_1552_18
unknown

Not on your lists

19933..20337
DNA (405bp) protein (135aa)
XRE family transcriptional regulator n=1 Tax=Paenibacillus massiliensis RepID=UPI000376BDF7
L1_007_000M1_scaffold_1552_19
unknown

Not on your lists

21516..21620
DNA (105bp) protein (35aa)

This feature has no annotations

L1_007_000M1_scaffold_1552_20
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22066..22434
DNA (369bp) protein (123aa)
Glycosyltransferase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q0V7_9FIRM
Glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:CDC15587.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_1552_21
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22760..24433
DNA (1674bp) protein (558aa)
Phosphomannomutase (EC:5.4.2.8)
Phosphomannomutase {ECO:0000313|EMBL:CBL18904.1}; EC=5.4.2.8 {ECO:0000313|EMBL:CBL18904.1};; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
Phosphomannomutase n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LGE3_9FIRM
L1_007_000M1_scaffold_1552_22
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24452..25762
DNA (1311bp) protein (437aa)
Mannose-1-phosphate guanylyltransferase (EC:5.3.1.8)
Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase n=1 Tax=Clostridium sp. KLE 1755 RepID=U2ATJ6_9CLOT
Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase {ECO:0000313|EMBL:ERI69164.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
L1_007_000M1_scaffold_1552_23
Enterococcus columbae, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25774..26739
DNA (966bp) protein (322aa)
mannose-6-phosphate isomerase, class I (EC:5.3.1.8)
Mannose-6-phosphate isomerase, class I n=1 Tax=Enterococcus columbae DSM 7374 = ATCC 51263 RepID=S1MU66_9ENTE
Mannose-6-phosphate isomerase, class I {ECO:0000313|EMBL:EOW80240.1}; TaxID=1121865 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus columbae DSM 7374 = ATCC 51263.;"
L1_007_000M1_scaffold_1552_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26758..27882
DNA (1125bp) protein (375aa)
Glycosyltransferase (EC:2.4.1.87)
Glycosyltransferase {ECO:0000313|EMBL:CBL02956.1}; EC=2.4.1.87 {ECO:0000313|EMBL:CBL02956.1};; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
Glycosyltransferase n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K5U7_9FIRM
L1_007_000M1_scaffold_1552_25
Bacteroides sp. CAG:1076, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27932..29053
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:1076 RepID=R5MN45_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCY93175.1}; TaxID=1262735 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:1076.;"
hypothetical protein
L1_007_000M1_scaffold_1552_26
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29050..29709
DNA (660bp) protein (220aa)
glycosyltransferase family protein (EC:2.4.-.-)
Putative acetyl transferase n=1 Tax=Eubacterium sp. CAG:38 RepID=R7H7A7_9FIRM
Putative acetyl transferase {ECO:0000313|EMBL:CDE35181.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
L1_007_000M1_scaffold_1552_27
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

29730..30659
DNA (930bp) protein (310aa)
Glycosyl transferase group 2 family n=1 Tax=Megasphaera elsdenii CAG:570 RepID=R7MY81_9FIRM
Glycosyl transferase group 2 family {ECO:0000313|EMBL:CDF05286.1}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
hypothetical protein
L1_007_000M1_scaffold_1552_28
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30676..31740
DNA (1065bp) protein (355aa)
Uncharacterized protein n=2 Tax=Clostridium symbiosum RepID=U2BXI9_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA94406.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L1_007_000M1_scaffold_1552_29
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31737..32960
DNA (1224bp) protein (408aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GLD0_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA94407.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
L1_007_000M1_scaffold_1552_30
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32924..34126
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BWA8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI76535.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
Displaying items 1-30 of 40 in total

View Taxonomy