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L1_007_000M1_scaffold_61

Search features with annotation key words

Displaying items 1-30 of 137 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_61_1
unknown

Not on your lists

comp(2..61)
DNA (60bp) protein (20aa)

This feature has no annotations

L1_007_000M1_scaffold_61_2
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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135..467
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CIZ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI69192.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L1_007_000M1_scaffold_61_3
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

587..970
DNA (384bp) protein (128aa)
Glyoxalase family protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CPH6_9CLOT
Glyoxalase family protein {ECO:0000313|EMBL:ERI69191.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
Lactoylglutathione lyase and related lyases
L1_007_000M1_scaffold_61_4
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1011..1745
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2BAJ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI69190.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L1_007_000M1_scaffold_61_5

Not on your lists

comp(2017..2235)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SJW5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC55704.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_61_6
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2410..2862)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CIY5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI69187.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
YolD-like protein.
L1_007_000M1_scaffold_61_7
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2874..4346)
DNA (1473bp) protein (491aa)
ImpB/MucB/SamB family protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CPG1_9CLOT
ImpB/MucB/SamB family protein {ECO:0000313|EMBL:ERI69186.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair
L1_007_000M1_scaffold_61_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4611..5936
DNA (1326bp) protein (442aa)
Uncharacterized Fe-S center protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5H1_9FIRM
Uncharacterized Fe-S center protein
Uncharacterized Fe-S center protein {ECO:0000313|EMBL:CBL26483.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_61_9
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6004..6339
DNA (336bp) protein (112aa)
Thermophilic glucose-6-phosphate isomerase and related metalloenzymes n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5H2_9FIRM
Thermophilic glucose-6-phosphate isomerase and related metalloenzymes
Thermophilic glucose-6-phosphate isomerase and related metalloenzymes {ECO:0000313|EMBL:CBL26484.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_61_10
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6449..7378)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NTX5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC15618.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_61_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7538..9352
DNA (1815bp) protein (605aa)
ABC transporter, ATP-binding protein n=2 Tax=Ruminococcus lactaris RepID=B5CQL4_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDY32441.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ATPase components of ABC transporters with duplicated ATPase domains
L1_007_000M1_scaffold_61_12
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9519..10016
DNA (498bp) protein (166aa)
acetolactate synthase, small subunit (EC:2.2.1.6)
Acetolactate synthase, small subunit {ECO:0000313|EMBL:CBL26486.1}; EC=2.2.1.6 {ECO:0000313|EMBL:CBL26486.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Acetolactate synthase, small subunit n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5H4_9FIRM
L1_007_000M1_scaffold_61_13
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10162..11181
DNA (1020bp) protein (340aa)
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Ketol-acid reductoisomerase n=2 Tax=Clostridiales RepID=D4M5H6_9FIRM
L1_007_000M1_scaffold_61_14
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11477..11740)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PAR5_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
30S ribosomal protein S20
L1_007_000M1_scaffold_61_15
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11971..12960
DNA (990bp) protein (330aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
GPR endopeptidase (EC:3.4.24.78)
Germination protease n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q0Z9_9FIRM
L1_007_000M1_scaffold_61_16
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12991..14193
DNA (1203bp) protein (401aa)
Stage II sporulation protein P (SpoIIP) n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P4L4_9FIRM
Stage II sporulation protein P (SpoIIP) {ECO:0000313|EMBL:CDC15639.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Stage II sporulation protein P (SpoIIP).
L1_007_000M1_scaffold_61_17
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14349..16271
DNA (1923bp) protein (641aa)
DNA topoisomerase IV subunit B (EC:5.99.1.3)
DNA topoisomerase IV subunit B {ECO:0000313|EMBL:CBL26491.1}; EC=5.99.1.3 {ECO:0000313|EMBL:CBL26491.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
DNA topoisomerase IV subunit B n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5H9_9FIRM
L1_007_000M1_scaffold_61_18
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16283..18523
DNA (2241bp) protein (747aa)
Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit (EC:5.99.1.3)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954, ECO:0000313|EMBL:CBL26492.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5I0_9FIRM
L1_007_000M1_scaffold_61_19
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18762..19229
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NWT4_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_61_20
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19247..20443
DNA (1197bp) protein (399aa)
Transcription termination factor NusA n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NU03_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
transcription termination factor NusA
L1_007_000M1_scaffold_61_21
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20464..20736
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P4M5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC15649.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted nucleic-acid-binding protein implicated in transcription termination
L1_007_000M1_scaffold_61_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20729..21040
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BK01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD15439.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ribosomal protein L7Ae/L30e/S12e/Gadd45
L1_007_000M1_scaffold_61_23
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21098..23752
DNA (2655bp) protein (885aa)
Translation initiation factor IF-2 n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PAU0_9FIRM
bacterial translation initiation factor 2 (bIF-2)
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_61_24
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23872..24246
DNA (375bp) protein (125aa)
Ribosome-binding factor A n=2 Tax=Clostridiales RepID=D4M5I3_9FIRM
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_61_25
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24247..25224
DNA (978bp) protein (326aa)
Exopolyphosphatase-related proteins n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5I4_9FIRM
Exopolyphosphatase-related proteins
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:CBL26496.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_61_26
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25221..26147
DNA (927bp) protein (309aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P4P0_9FIRM
L1_007_000M1_scaffold_61_27
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26166..27077
DNA (912bp) protein (304aa)
riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2 2.7.1.26)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Riboflavin kinase/FMN adenylyltransferase n=2 Tax=Clostridiales RepID=D4M5I6_9FIRM
L1_007_000M1_scaffold_61_28
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27224..27490
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=2 Tax=Clostridiales RepID=D4M5I7_9FIRM
SSU ribosomal protein S15P
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_61_29
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27802..29889
DNA (2088bp) protein (696aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q120_9FIRM
L1_007_000M1_scaffold_61_30
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30039..30983
DNA (945bp) protein (315aa)
Stage III sporulation protein AA n=2 Tax=Clostridiales RepID=D4M5I9_9FIRM
stage III sporulation protein AA
Stage III sporulation protein AA {ECO:0000313|EMBL:CBL26501.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Displaying items 1-30 of 137 in total

View Taxonomy