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L1_007_000M1_scaffold_71

Search features with annotation key words

Displaying items 31-60 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_71_31
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(50634..51197)
DNA (564bp) protein (188aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=3 Tax=Parabacteroides RepID=A7AKP8_9PORP
L1_007_000M1_scaffold_71_32
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(51284..51868)
DNA (585bp) protein (195aa)
50S ribosomal protein L25 n=3 Tax=Parabacteroides merdae RepID=A7AKP7_9PORP
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
50S ribosomal protein L25
L1_007_000M1_scaffold_71_33
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(52084..52935)
DNA (852bp) protein (284aa)
Oxidoreductase short chain dehydrogenase/reductase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y4B5_9PORP
Oxidoreductase short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:CDD13237.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
dehydrogenase protein
L1_007_000M1_scaffold_71_34
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(52935..54161)
DNA (1227bp) protein (409aa)
NADPH dehydrogenase (EC:1.6.99.1)
Oxidoreductase, FAD/FMN-binding protein n=2 Tax=Parabacteroides merdae RepID=A7AKP4_9PORP
Oxidoreductase, FAD/FMN-binding protein {ECO:0000313|EMBL:EDN84566.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L1_007_000M1_scaffold_71_35
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(54182..54907)
DNA (726bp) protein (242aa)
3-oxo-5-alpha-steroid 4-dehydrogenase. (EC:1.3.99.5)
3-oxo-5-alpha-steroid 4-dehydrogenase n=2 Tax=Parabacteroides merdae RepID=A7AKP3_9PORP
3-oxo-5-alpha-steroid 4-dehydrogenase {ECO:0000313|EMBL:EDN84565.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L1_007_000M1_scaffold_71_36
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(54933..55634)
DNA (702bp) protein (234aa)
Transcriptional regulatory protein RprY n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X352_9PORP
Transcriptional regulatory protein RprY {ECO:0000313|EMBL:CDD13524.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
two component transcriptional regulator, winged helix family
L1_007_000M1_scaffold_71_37
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(55642..55935)
DNA (294bp) protein (98aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AKP1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84563.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L1_007_000M1_scaffold_71_38
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(55959..59087)
DNA (3129bp) protein (1043aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZVH5_9PORP
Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter {ECO:0000313|EMBL:EKN07433.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
acriflavin resistance protein
L1_007_000M1_scaffold_71_39
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(59100..60125)
DNA (1026bp) protein (342aa)
Efflux transporter RND family MFP subunit n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WW49_9PORP
Efflux transporter RND family MFP subunit {ECO:0000313|EMBL:CDD13520.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
membrane fusion protein transporter
L1_007_000M1_scaffold_71_40
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(60163..61518)
DNA (1356bp) protein (452aa)
Outer membrane efflux protein n=3 Tax=Parabacteroides RepID=A7AKN8_9PORP
Outer membrane efflux protein {ECO:0000313|EMBL:CDD13519.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
outer membrane efflux protein
L1_007_000M1_scaffold_71_41
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(61585..62196)
DNA (612bp) protein (204aa)
Transcriptional regulator, TetR family n=3 Tax=Parabacteroides RepID=A7AKN7_9PORP
Transcriptional regulator TetR family {ECO:0000313|EMBL:CDD13518.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
transcriptional regulator
L1_007_000M1_scaffold_71_42
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

62417..63325
DNA (909bp) protein (303aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5YWC7_9PORP
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDD13517.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
transcriptional regulator
L1_007_000M1_scaffold_71_43
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(63351..63869)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XB22_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13516.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_71_44
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(63916..64212)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WW45_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13515.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_71_45
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

64636..66243
DNA (1608bp) protein (536aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase n=3 Tax=Parabacteroides RepID=A7AKN0_9PORP
L1_007_000M1_scaffold_71_46
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

66253..68169
DNA (1917bp) protein (639aa)
Membrane protein insertase YidC n=2 Tax=Parabacteroides RepID=A7AKM9_9PORP
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
inner membrane protein translocase component YidC
L1_007_000M1_scaffold_71_47
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(68233..69018)
DNA (786bp) protein (262aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase n=3 Tax=Parabacteroides RepID=A7AKM8_9PORP
L1_007_000M1_scaffold_71_48
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(69054..71321)
DNA (2268bp) protein (756aa)
TrkA C-terminal domain protein n=4 Tax=Parabacteroides RepID=A7AKM7_9PORP
TrkA C-terminal domain protein {ECO:0000313|EMBL:CDD13510.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Na+/H+ antiporter
L1_007_000M1_scaffold_71_49
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

71393..72031
DNA (639bp) protein (213aa)
Divergent AAA domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X343_9PORP
Divergent AAA domain protein {ECO:0000313|EMBL:CDD13509.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_71_50
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(72054..73436)
DNA (1383bp) protein (461aa)
Nodulation efficiency protein D n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WQF3_9PORP
Nodulation efficiency protein D {ECO:0000313|EMBL:CDD13508.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
membrane-bound serine protease
L1_007_000M1_scaffold_71_51
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

73698..74207
DNA (510bp) protein (170aa)
Sigma-70 region 2 n=3 Tax=Parabacteroides RepID=A7AKM4_9PORP
Sigma-70 region 2 {ECO:0000313|EMBL:EDN84546.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
RNA polymerase ECF-type sigma factor
L1_007_000M1_scaffold_71_52
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

74306..75328
DNA (1023bp) protein (341aa)
Beta-eliminating lyase n=3 Tax=Parabacteroides RepID=A7AKM3_9PORP
Beta-eliminating lyase {ECO:0000313|EMBL:EDN84545.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L-threonine aldolase
L1_007_000M1_scaffold_71_53
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

75424..77292
DNA (1869bp) protein (623aa)
Ser/Thr phosphatase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WW38_9PORP
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:CDD13505.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_71_54
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

77311..78681
DNA (1371bp) protein (457aa)
Xanthine permease n=2 Tax=Parabacteroides RepID=A7AKM1_9PORP
Xanthine permease {ECO:0000313|EMBL:EDN84543.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
purine permease
L1_007_000M1_scaffold_71_55
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

78684..79250
DNA (567bp) protein (189aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
xanthine phosphoribosyltransferase (EC:2.4.2.22)
Xanthine phosphoribosyltransferase n=4 Tax=Parabacteroides RepID=A7AKM0_9PORP
L1_007_000M1_scaffold_71_56
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(79271..79795)
DNA (525bp) protein (175aa)
Phosphoglycerate mutase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y547_9PORP
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:CDD13502.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Phosphoglycerate mutase
L1_007_000M1_scaffold_71_57
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(80075..80392)
DNA (318bp) protein (106aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=B7BCQ8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12942.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
hypothetical protein
L1_007_000M1_scaffold_71_58
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(80407..81300)
DNA (894bp) protein (298aa)
Putative chaperone protein DnaJ n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WW36_9PORP
Putative chaperone protein DnaJ {ECO:0000313|EMBL:CDD13500.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
chaperone DnAJ
L1_007_000M1_scaffold_71_59
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

81365..81535
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X336_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13499.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_71_60
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

81631..81855
DNA (225bp) protein (75aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7AKL5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84537.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
Displaying items 31-60 of 106 in total

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