ggKbase home page

L1_007_000M1_scaffold_71

Search features with annotation key words

Displaying items 61-90 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_71_61
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

82700..83293
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family n=3 Tax=Parabacteroides merdae RepID=A7AKL1_9PORP
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EDN84533.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transcriptional regulator
L1_007_000M1_scaffold_71_62
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

83308..84252
DNA (945bp) protein (315aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=4 Tax=Parabacteroides RepID=A7AKL0_9PORP
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000313|EMBL:CDD12284.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
3-oxoacyl-ACP synthase
L1_007_000M1_scaffold_71_63
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

84271..85017
DNA (747bp) protein (249aa)
3-oxoacyl-[acyl-carrier-protein] reductase n=2 Tax=Parabacteroides RepID=K5Y2V3_9PORP
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:EKN07407.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
3-oxoacyl-ACP reductase
L1_007_000M1_scaffold_71_64
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

85111..85788
DNA (678bp) protein (226aa)
Pseudouridine synthase, RluA family n=4 Tax=Parabacteroides RepID=A7AKK8_9PORP
RluA family pseudouridine synthase {ECO:0000313|EMBL:EKN07406.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
ribosomal large subunit pseudouridine synthase D
L1_007_000M1_scaffold_71_65
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(85840..86769)
DNA (930bp) protein (310aa)
Putative membrane protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y1B2_9PORP
Putative membrane protein {ECO:0000313|EMBL:CDD12287.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
membrane protein
L1_007_000M1_scaffold_71_66
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

87002..87739
DNA (738bp) protein (246aa)
Copper homeostasis protein CutC n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WM89_9PORP
Copper homeostasis protein CutC {ECO:0000256|HAMAP-Rule:MF_00795}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
copper homeostasis protein
L1_007_000M1_scaffold_71_67
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

87815..88018
DNA (204bp) protein (68aa)
PspC domain protein n=4 Tax=Parabacteroides RepID=A7AKK5_9PORP
PspC domain protein {ECO:0000313|EMBL:CDD12289.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Putative stress-responsive transcriptional regulator
L1_007_000M1_scaffold_71_68
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

88015..90042
DNA (2028bp) protein (676aa)
UvrABC system protein B n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WSD7_9PORP
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
excinuclease ABC subunit B
L1_007_000M1_scaffold_71_69
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

90057..90887
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y1B7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12292.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_71_70
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(90890..93070)
DNA (2181bp) protein (727aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WZE9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12294.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_71_71
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

93200..93901
DNA (702bp) protein (234aa)
Cyclic nucleotide-binding domain protein n=4 Tax=Parabacteroides RepID=A7AKK1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN07399.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
transcriptional regulator
L1_007_000M1_scaffold_71_72
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(94018..94824)
DNA (807bp) protein (269aa)
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
3-deoxy-8-phosphooctulonate synthase n=3 Tax=Parabacteroides RepID=A7AKK0_9PORP
3-deoxy-8-phosphooctulonate synthase {ECO:0000313|EMBL:EDN84522.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L1_007_000M1_scaffold_71_73
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(94895..95812)
DNA (918bp) protein (306aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Y2U5_9PORP
L1_007_000M1_scaffold_71_74
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(95884..96894)
DNA (1011bp) protein (337aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=3 Tax=Parabacteroides merdae RepID=A7AKJ8_9PORP
glyceraldehyde 3-phosphate dehydrogenase
L1_007_000M1_scaffold_71_75
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(97077..97454)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XAK1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13376.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_71_76
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(97411..97821)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WVM5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13375.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_71_77
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(97828..98049)
DNA (222bp) protein (74aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AKJ4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84516.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L1_007_000M1_scaffold_71_78
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(98140..98991)
DNA (852bp) protein (284aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Ribosomal protein L11 methyltransferase n=3 Tax=Parabacteroides RepID=A7AKJ3_9PORP
prmA; 50S ribosomal protein L11 methyltransferase
L1_007_000M1_scaffold_71_79
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(99189..101093)
DNA (1905bp) protein (635aa)
SusD family protein n=2 Tax=Parabacteroides merdae RepID=A7AKJ2_9PORP
SusD family protein {ECO:0000313|EMBL:EDN84514.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
SusD family protein
L1_007_000M1_scaffold_71_80
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(101113..104445)
DNA (3333bp) protein (1111aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Parabacteroides merdae RepID=A7AKJ1_9PORP
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:EDN84513.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
TonB-linked outer membrane protein, SusC/RagA family
L1_007_000M1_scaffold_71_81
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

105518..108253
DNA (2736bp) protein (912aa)
Alpha-L-rhamnosidase N-terminal domain protein n=3 Tax=Parabacteroides RepID=A7AKI9_9PORP
Alpha-L-rhamnosidase N-terminal domain protein {ECO:0000313|EMBL:EDN84511.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
alpha-L-rhamnosidase N-terminal domain-containing protein
L1_007_000M1_scaffold_71_82
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


108385..108702
DNA (318bp) protein (106aa)
50S ribosomal protein L21 n=7 Tax=Parabacteroides RepID=A7AKI8_9PORP
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
rplU; 50S ribosomal protein L21
L1_007_000M1_scaffold_71_83
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


108725..108991
DNA (267bp) protein (89aa)
50S ribosomal protein L27 n=4 Tax=Parabacteroides RepID=A7AKI7_9PORP
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
rpmA; 50S ribosomal protein L27
L1_007_000M1_scaffold_71_84
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

109069..109611
DNA (543bp) protein (181aa)
NlpC/P60 family protein n=3 Tax=Parabacteroides RepID=A7AKI6_9PORP
NlpC/P60 family protein {ECO:0000313|EMBL:EDN84508.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
lipoprotein
L1_007_000M1_scaffold_71_85
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

110218..111492
DNA (1275bp) protein (425aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=3 Tax=Parabacteroides RepID=A7AKI4_9PORP
Serine--tRNA ligase {ECO:0000313|EMBL:CDD13365.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_71_86
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(111672..114116)
DNA (2445bp) protein (815aa)
Pyridine nucleotide-disulfide oxidoreductase n=3 Tax=Parabacteroides RepID=A7AKI2_9PORP
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EDN84504.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
pyridine nucleotide-disulfide oxidoreductase
L1_007_000M1_scaffold_71_87
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(114181..114546)
DNA (366bp) protein (122aa)
Transcriptional regulator, MarR family n=4 Tax=Parabacteroides RepID=A7AKI1_9PORP
Transcriptional regulator MarR family {ECO:0000313|EMBL:CDD13362.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
transcriptional regulator
L1_007_000M1_scaffold_71_88
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(114735..115712)
DNA (978bp) protein (326aa)
dihydroorotate dehydrogenase 2 (EC:1.3.98.1)
Dihydroorotate dehydrogenase 2 n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XAI3_9PORP
Dihydroorotate dehydrogenase 2 {ECO:0000313|EMBL:CDD13361.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_71_89
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(115798..116466)
DNA (669bp) protein (223aa)
Pyridoxal phosphate enzyme YggS family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WVK6_9PORP
Pyridoxal phosphate enzyme YggS family {ECO:0000313|EMBL:CDD13360.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_71_90
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(116463..116969)
DNA (507bp) protein (169aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5Y2S7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13359.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
Displaying items 61-90 of 106 in total

View Taxonomy