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L1_007_000M1_scaffold_128

Search features with annotation key words

Displaying items 61-88 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_128_61
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(70439..71845)
DNA (1407bp) protein (469aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
asnC; asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WX10_9PORP
L1_007_000M1_scaffold_128_62
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(71913..73370)
DNA (1458bp) protein (486aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Pseudouridine synthase n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z7E5_9PORP
ribosomal large subunit pseudouridine synthase B
L1_007_000M1_scaffold_128_63
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(73432..74775)
DNA (1344bp) protein (448aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X5H6_9PORP
L1_007_000M1_scaffold_128_64
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

74834..75037
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ADE5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87086.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L1_007_000M1_scaffold_128_65
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(75404..75844)
DNA (441bp) protein (147aa)
DoxX family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XZ29_9PORP
DoxX family protein {ECO:0000313|EMBL:CDD11477.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_128_66
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

76227..77264
DNA (1038bp) protein (346aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
asparagine synthetase AsnA (EC:6.3.1.1)
Aspartate--ammonia ligase n=3 Tax=Parabacteroides RepID=A7ADF0_9PORP
L1_007_000M1_scaffold_128_67
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

77380..78042
DNA (663bp) protein (221aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Uracil-DNA glycosylase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WK14_9PORP
uracil-DNA glycosylase
L1_007_000M1_scaffold_128_68
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(78063..80828)
DNA (2766bp) protein (922aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X5G5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11471.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_128_69
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(80894..81436)
DNA (543bp) protein (181aa)
HDIG domain protein n=4 Tax=Parabacteroides RepID=A7ADF3_9PORP
HDIG domain protein {ECO:0000313|EMBL:CDD11469.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_128_70
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

81497..82720
DNA (1224bp) protein (408aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6AVF6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87096.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L1_007_000M1_scaffold_128_71
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

82754..84658
DNA (1905bp) protein (635aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B7Z7_9PORP
two-component regulator sensor kinase
L1_007_000M1_scaffold_128_72
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(84712..85143)
DNA (432bp) protein (144aa)
META domain protein n=3 Tax=Parabacteroides RepID=A7ADF6_9PORP
META domain protein {ECO:0000313|EMBL:CDD11463.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_128_73
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(85166..85591)
DNA (426bp) protein (142aa)
META domain protein n=3 Tax=Parabacteroides RepID=A7ADF7_9PORP
META domain protein {ECO:0000313|EMBL:CDD11461.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_128_74
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

85916..86179
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BUV7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN06747.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L1_007_000M1_scaffold_128_75
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

86563..86730
DNA (168bp) protein (56aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7ADG1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13441.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_128_76
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

86727..87977
DNA (1251bp) protein (417aa)
Peptidase M23 family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WVU8_9PORP
Peptidase M23 family {ECO:0000313|EMBL:CDD13440.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
metalloendopeptidase-like membrane protein
L1_007_000M1_scaffold_128_77
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

87988..88356
DNA (369bp) protein (123aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7ADG3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87105.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L1_007_000M1_scaffold_128_78
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(88433..89269)
DNA (837bp) protein (279aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Glutamate racemase n=3 Tax=Parabacteroides merdae RepID=A7ADG4_9PORP
glutamate racemase
L1_007_000M1_scaffold_128_79
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(89423..89920)
DNA (498bp) protein (166aa)
Outer membrane protein n=6 Tax=Parabacteroides RepID=A7ADG5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN15024.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
cationic outer membrane protein OmpH
L1_007_000M1_scaffold_128_80
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(89993..90508)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WQ39_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13438.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
cationic outer membrane protein OmpH
L1_007_000M1_scaffold_128_81
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(90717..93404)
DNA (2688bp) protein (896aa)
Outer membrane protein assembly complex, YaeT protein n=2 Tax=Parabacteroides merdae RepID=A7ADG8_9PORP
Outer membrane protein assembly complex, YaeT protein {ECO:0000313|EMBL:EDN87110.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane protein
L1_007_000M1_scaffold_128_82
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(93419..94162)
DNA (744bp) protein (248aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Isoprenyl transferase n=4 Tax=Parabacteroides RepID=A7ADG9_9PORP
UDP pyrophosphate synthetase
L1_007_000M1_scaffold_128_83
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(94180..94899)
DNA (720bp) protein (240aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7ADH0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87112.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L1_007_000M1_scaffold_128_84
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(94987..96369)
DNA (1383bp) protein (461aa)
BNR/Asp-box repeat protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WQ33_9PORP
BNR/Asp-box repeat protein {ECO:0000313|EMBL:CDD13433.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_128_85
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(96485..97528)
DNA (1044bp) protein (348aa)
Riboflavin biosynthesis protein RibD n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y4W7_9PORP
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
riboflavin biosynthesis protein ribD
L1_007_000M1_scaffold_128_86
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

97749..98000
DNA (252bp) protein (84aa)
Tyrosine type site-specific recombinase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XAR2_9PORP
Tyrosine type site-specific recombinase {ECO:0000313|EMBL:CDD13431.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
tyrosine type site-specific recombinase
L1_007_000M1_scaffold_128_87
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(98233..99156)
DNA (924bp) protein (308aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5Z5Z6_9PORP
Transposase {ECO:0000313|EMBL:CDD13430.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
transposase
L1_007_000M1_scaffold_128_88
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

99292..99804
DNA (513bp) protein (171aa)
Uncharacterized protein (Fragment) n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Y162_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN06762.1}; Flags: Fragment;; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
type I restriction enzyme specificity protein
Displaying items 61-88 of 88 in total

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