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L1_007_000M1_scaffold_128

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_128_1
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3..344)
DNA (342bp) protein (114aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K6AI06_9PORP
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
L1_007_000M1_scaffold_128_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(940..1239)
DNA (300bp) protein (100aa)
Ribosomal subunit interface protein n=3 Tax=Parabacteroides merdae RepID=A7AD73_9PORP
Ribosomal subunit interface protein {ECO:0000313|EMBL:EDN87015.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
sigma-54 modulation protein
L1_007_000M1_scaffold_128_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1236..2144)
DNA (909bp) protein (303aa)
Tyrosine recombinase XerC n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD74_9PORP
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
tyrosine type site-specific recombinase
L1_007_000M1_scaffold_128_4
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2221..2412)
DNA (192bp) protein (64aa)
30S ribosomal protein S21 n=6 Tax=Parabacteroides RepID=A7AD75_9PORP
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
rpsU; 30S ribosomal protein S21
L1_007_000M1_scaffold_128_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2510..3559)
DNA (1050bp) protein (350aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Methylthioribose-1-phosphate isomerase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XY17_9PORP
mtnA; methylthioribose-1-phosphate isomerase
L1_007_000M1_scaffold_128_6
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3884..4960
DNA (1077bp) protein (359aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61)
tRNA-specific 2-thiouridylase mnmA n=3 Tax=Parabacteroides RepID=K5Z785_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX77204.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
L1_007_000M1_scaffold_128_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5315..6256)
DNA (942bp) protein (314aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=4 Tax=Parabacteroides RepID=A7AD80_9PORP
Ribose-phosphate diphosphokinase {ECO:0000313|EMBL:EDN87022.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L1_007_000M1_scaffold_128_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6403..8094)
DNA (1692bp) protein (564aa)
Alpha amylase, catalytic domain protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD81_9PORP
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EDN87023.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glycoside hydrolase family protein
L1_007_000M1_scaffold_128_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8153..8992)
DNA (840bp) protein (280aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5YV69_9PORP
Phospholipase patatin family {ECO:0000313|EMBL:CDD11136.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_128_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9173..11377
DNA (2205bp) protein (735aa)
Putative K(+)-stimulated pyrophosphate-energized sodium pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound sodium-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
Putative K(+)-stimulated pyrophosphate-energized sodium pump n=3 Tax=Parabacteroides RepID=A7AD83_9PORP
L1_007_000M1_scaffold_128_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11843..14035
DNA (2193bp) protein (731aa)
Glutamate--ammonia ligase, catalytic domain protein n=5 Tax=Parabacteroides RepID=A7AD85_9PORP
Glutamate--ammonia ligase, catalytic domain protein {ECO:0000313|EMBL:EDN87027.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glutamine synthetase
L1_007_000M1_scaffold_128_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14133..15293
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WPE3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13133.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
conserved hypothetical lipoprotein
L1_007_000M1_scaffold_128_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15309..16346)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B9R8_9PORP
F5/8 type C domain protein {ECO:0000313|EMBL:CDD13134.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
beta-glycosidase
L1_007_000M1_scaffold_128_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16656..16970
DNA (315bp) protein (105aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=K5ZU77_9PORP
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDN87030.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transcriptional regulator
L1_007_000M1_scaffold_128_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17031..17303)
DNA (273bp) protein (91aa)
alpha-glucosidase (EC:3.2.1.20)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X9Y8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13136.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_128_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17252..18223)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y421_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13137.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycoside hydrolase
L1_007_000M1_scaffold_128_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18162..20162)
DNA (2001bp) protein (667aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WPE6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13138.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_128_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20330..21679)
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BAH0_9PORP
Outer membrane efflux protein {ECO:0000313|EMBL:EDN87033.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane transport/efflux protein
L1_007_000M1_scaffold_128_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21697..22818)
DNA (1122bp) protein (374aa)
Efflux transporter, RND family, MFP subunit n=2 Tax=Parabacteroides merdae RepID=A7AD92_9PORP
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EDN87034.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
membrane fusion efflux protein
L1_007_000M1_scaffold_128_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22898..24166)
DNA (1269bp) protein (423aa)
Efflux ABC transporter permease protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XZE4_9PORP
Efflux ABC transporter permease protein {ECO:0000313|EMBL:CDD11567.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
efflux ABC transporter permease
L1_007_000M1_scaffold_128_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24191..25456)
DNA (1266bp) protein (422aa)
Efflux ABC transporter, permease protein n=2 Tax=Parabacteroides merdae RepID=A7AD94_9PORP
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDN87036.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
efflux ABC transporter permease
L1_007_000M1_scaffold_128_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25449..26132)
DNA (684bp) protein (228aa)
ABC transporter ATP-binding protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WXB2_9PORP
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD11564.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ABC transporter ATP-binding protein
L1_007_000M1_scaffold_128_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26491..27672
DNA (1182bp) protein (394aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Phosphoribosylglycinamide formyltransferase 2 n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WKA0_9PORP
phosphoribosylglycinamide formyltransferase
L1_007_000M1_scaffold_128_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27771..28493
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XZE0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11562.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
metal dependent hydrolase
L1_007_000M1_scaffold_128_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28522..28899
DNA (378bp) protein (126aa)
Glyoxalase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X5R0_9PORP
Glyoxalase family protein {ECO:0000313|EMBL:CDD11561.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
lactoylglutathione lyase
L1_007_000M1_scaffold_128_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29020..29982
DNA (963bp) protein (321aa)
ROK family protein n=3 Tax=Parabacteroides RepID=A7ADA0_9PORP
ROK family protein {ECO:0000313|EMBL:EDN87041.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transcriptional repressor
L1_007_000M1_scaffold_128_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30086..30601
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WXA8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11559.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
mutT family protein
L1_007_000M1_scaffold_128_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30682..33681
DNA (3000bp) protein (1000aa)
Tetratricopeptide repeat protein n=2 Tax=Parabacteroides merdae RepID=A7ADA2_9PORP
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EDN87044.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L1_007_000M1_scaffold_128_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33691..35442
DNA (1752bp) protein (584aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XZD7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11557.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB-dependent receptor
L1_007_000M1_scaffold_128_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35661..36989
DNA (1329bp) protein (443aa)
MATE efflux family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X5Q8_9PORP
MATE efflux family protein {ECO:0000313|EMBL:CDD11556.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
Displaying items 1-30 of 88 in total

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