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L1_007_000M1_scaffold_131

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_131_1
unknown

Not on your lists

comp(1..66)
DNA (66bp) protein (22aa)

This feature has no annotations

L1_007_000M1_scaffold_131_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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328..540
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6G1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79011.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_131_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

746..2416
DNA (1671bp) protein (557aa)
Putative cyclic diguanylate phosphodiesterase domain protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VE70_9FIRM
Putative cyclic diguanylate phosphodiesterase domain protein {ECO:0000313|EMBL:CCZ79012.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
FOG: EAL domain
L1_007_000M1_scaffold_131_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2420..3205)
DNA (786bp) protein (262aa)
Transcriptional regulator DeoR family n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL76_9FIRM
Transcriptional regulator DeoR family {ECO:0000313|EMBL:CCZ79013.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Transcriptional regulators of sugar metabolism
L1_007_000M1_scaffold_131_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3386..4855
DNA (1470bp) protein (490aa)
Polyphosphate:AMP phosphotransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTL9_9FIRM
Polyphosphate:AMP phosphotransferase {ECO:0000313|EMBL:CCZ79014.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
polyphosphate:AMP phosphotransferase
L1_007_000M1_scaffold_131_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4941..9194)
DNA (4254bp) protein (1418aa)
Putative R-2-hydroxyglutaryl-CoA dehydratase subunit/R-2-hydroxyglutaryl-CoA dehydratase activase n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULX4_9FIRM
Putative R-2-hydroxyglutaryl-CoA dehydratase subunit/R-2-hydroxyglutaryl-CoA dehydratase activase {ECO:0000313|EMBL:CCZ79015.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative R-2-hydroxyglutaryl-CoA dehydratase subunit/R-2-hydroxyglutaryl-CoA dehydratase activase
L1_007_000M1_scaffold_131_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9447..10322
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6G6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79016.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_131_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10351..11562
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VE75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79017.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
nucleoside-binding protein
L1_007_000M1_scaffold_131_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11647..13326
DNA (1680bp) protein (560aa)
Glutamine--tRNA ligase {ECO:0000256|SAAS:SAAS00023088}; EC=6.1.1.18 {ECO:0000256|SAAS:SAAS00023088};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glutaminyl-tRNA synthetase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL79_9FIRM
glutaminyl-tRNA synthetase
L1_007_000M1_scaffold_131_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13351..14223
DNA (873bp) protein (291aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTM2_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCZ79019.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_131_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14227..14814
DNA (588bp) protein (196aa)
Predicted double-stranded RNA/RNA-DNA hybrid binding protein (EC:3.1.26.4)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79020.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_131_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14833..15945
DNA (1113bp) protein (371aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
3-dehydroquinate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6G9_9FIRM
3-dehydroquinate synthase
L1_007_000M1_scaffold_131_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15949..17259)
DNA (1311bp) protein (437aa)
UPF0348 protein EUBREC_1493 n=1 Tax=Roseburia sp. CAG:18 RepID=R5VE80_9FIRM
UPF0348 protein BN518_00328 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
cytidyltransferase-related domain
L1_007_000M1_scaffold_131_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17417..18607
DNA (1191bp) protein (397aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Acetate kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL81_9FIRM
acetate kinase
L1_007_000M1_scaffold_131_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18699..19223
DNA (525bp) protein (175aa)
Predicted Zn-finger-like protein possible nucleic acid binding n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTM6_9FIRM
Predicted Zn-finger-like protein possible nucleic acid binding {ECO:0000313|EMBL:CCZ79024.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
nucleic acid-binding Zn-finger-like protein
L1_007_000M1_scaffold_131_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19228..19407
DNA (180bp) protein (60aa)
50S ribosomal protein L32 n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULY1_9FIRM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_131_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19548..20573
DNA (1026bp) protein (342aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Phosphate acyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6H3_9FIRM
phosphate:acyl-[acyl carrier protein] acyltransferase
L1_007_000M1_scaffold_131_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20592..20828
DNA (237bp) protein (79aa)
Acyl carrier protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VE85_9FIRM
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
acyl carrier protein
L1_007_000M1_scaffold_131_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20886..21575
DNA (690bp) protein (230aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
RNAse III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL85_9FIRM
L1_007_000M1_scaffold_131_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21579..25136
DNA (3558bp) protein (1186aa)
Chromosome partition protein Smc n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTM9_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
condensin subunit Smc
L1_007_000M1_scaffold_131_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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25180..26142
DNA (963bp) protein (321aa)
Signal recognition particle receptor FtsY n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULY5_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
cell division protein FtsY
L1_007_000M1_scaffold_131_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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26120..27337
DNA (1218bp) protein (406aa)
Threonine dehydratase medium form n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6H7_9FIRM
Threonine dehydratase medium form {ECO:0000313|EMBL:CCZ79031.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
threonine dehydratase
L1_007_000M1_scaffold_131_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27369..27758
DNA (390bp) protein (130aa)
UPF0122 protein EUR_09570 n=1 Tax=Roseburia sp. CAG:18 RepID=R5VE90_9FIRM
UPF0122 protein BN518_00338 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_131_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27760..29118
DNA (1359bp) protein (453aa)
Signal recognition particle protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL87_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
signal recognition particle protein
L1_007_000M1_scaffold_131_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


29151..29396
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTN2_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
SSU ribosomal protein S16P
L1_007_000M1_scaffold_131_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29419..29649
DNA (231bp) protein (77aa)
UPF0109 protein BN518_00341 n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULY8_9FIRM
UPF0109 protein BN518_00341 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_131_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29750..30256
DNA (507bp) protein (169aa)
Ribosome maturation factor RimM n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6H9_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
rimM; 16S rRNA-processing protein RimM
L1_007_000M1_scaffold_131_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30271..31701
DNA (1431bp) protein (477aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014918}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014917};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VE95_9FIRM
tRNA (guanine-N1)-methyltransferase
L1_007_000M1_scaffold_131_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


31872..32225
DNA (354bp) protein (118aa)
50S ribosomal protein L19 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL90_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ribosomal protein L19, bacterial type
L1_007_000M1_scaffold_131_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32297..32878
DNA (582bp) protein (194aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTN5_9FIRM
Displaying items 1-30 of 102 in total

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