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L1_007_000M1_scaffold_138

Search features with annotation key words

Displaying items 31-60 of 175 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_138_31
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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34750..35526
DNA (777bp) protein (259aa)
Sporulation factor SpoIIGA n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NPZ8_9FIRM
Sporulation factor SpoIIGA {ECO:0000313|EMBL:CDC14283.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Sporulation factor SpoIIGA.
L1_007_000M1_scaffold_138_32
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35581..36321
DNA (741bp) protein (247aa)
RNA polymerase sigma factor n=2 Tax=Clostridiales RepID=D4M4W4_9FIRM
RNA polymerase, sigma 29 subunit, SigE
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_138_33
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36440..38044
DNA (1605bp) protein (535aa)
Predicted exonuclease of the beta-lactamase fold involved in RNA processing n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSU0_9FIRM
Predicted exonuclease of the beta-lactamase fold involved in RNA processing {ECO:0000313|EMBL:CDC14285.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted exonuclease of the beta-lactamase fold involved in RNA processing
L1_007_000M1_scaffold_138_34
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38148..38930
DNA (783bp) protein (261aa)
RNA polymerase sigma factor n=2 Tax=Clostridiales RepID=D4M4W6_9FIRM
RNA polymerase, sigma subunit, RpsG/SigG
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_138_35
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39059..39727
DNA (669bp) protein (223aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PX00_9FIRM
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CDC14287.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_138_36
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39727..39990
DNA (264bp) protein (88aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R6NQ03_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC14288.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_138_37
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40099..40275)
DNA (177bp) protein (59aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M4X0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL26282.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_138_38
unknown

Not on your lists

40324..40479
DNA (156bp) protein (52aa)

This feature has no annotations

L1_007_000M1_scaffold_138_39
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40454..41032
DNA (579bp) protein (193aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Peptidyl-tRNA hydrolase n=2 Tax=Clostridiales RepID=D4M4X1_9FIRM
L1_007_000M1_scaffold_138_40
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

41035..44391
DNA (3357bp) protein (1119aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSU5_9FIRM
L1_007_000M1_scaffold_138_41
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

44493..45548
DNA (1056bp) protein (352aa)
PPIC-type PPIASE domain n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P700_9FIRM
PPIC-type PPIASE domain {ECO:0000313|EMBL:CDC14291.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
PPIC-type PPIASE domain.
L1_007_000M1_scaffold_138_42
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(45644..46129)
DNA (486bp) protein (162aa)
Cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=2 Tax=Clostridiales RepID=D4M4X4_9FIRM
Cytidylate kinase {ECO:0000313|EMBL:CDC14292.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_138_43
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

46423..49716
DNA (3294bp) protein (1098aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NQ08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14293.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_138_44
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

49732..51015
DNA (1284bp) protein (428aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R6P0R0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL26287.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_138_45
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

50990..51757
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14295.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_138_46
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

51956..52780
DNA (825bp) protein (275aa)
Amino acid ABC transporter substrate-binding protein PAAT family (TC 3.A.1.3.-) n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P704_9FIRM
Amino acid ABC transporter substrate-binding protein PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CDC14296.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L1_007_000M1_scaffold_138_47
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

52804..53490
DNA (687bp) protein (229aa)
Amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-) n=2 Tax=Clostridiales RepID=D4M4X8_9FIRM
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
Amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CBL26290.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_138_48
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

53509..54294
DNA (786bp) protein (262aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CBL26291.1}; EC=3.6.3.21 {ECO:0000313|EMBL:CBL26291.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) n=1 Tax=Ruminococcus torques L2-14 RepID=D4M4X9_9FIRM
L1_007_000M1_scaffold_138_49
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

54526..55962
DNA (1437bp) protein (479aa)
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Amidophosphoribosyltransferase n=2 Tax=Clostridiales RepID=D4M4Y0_9FIRM
L1_007_000M1_scaffold_138_50
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

56037..57470
DNA (1434bp) protein (478aa)
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172, ECO:0000313|EMBL:CBL26293.1}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172, ECO:0000313|EMBL:CBL26293.1};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Adenylosuccinate lyase n=2 Tax=Clostridiales RepID=D4M4Y1_9FIRM
L1_007_000M1_scaffold_138_51
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

57607..58608
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P710_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14301.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_138_52
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

58705..60162
DNA (1458bp) protein (486aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
glutamyl-tRNA synthetase, bacterial family (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PX17_9FIRM
L1_007_000M1_scaffold_138_53
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

60183..62012
DNA (1830bp) protein (610aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
Superfamily I DNA and RNA helicases n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NQ21_9FIRM
L1_007_000M1_scaffold_138_54
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(62048..62365)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P0S1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14304.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Protein of unknown function (DUF1292).
L1_007_000M1_scaffold_138_55
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

62551..63552
DNA (1002bp) protein (334aa)
Monosaccharide ABC transporter substrate-binding protein CUT2 family (TC 3.A.1.2.-) n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSW0_9FIRM
Monosaccharide ABC transporter substrate-binding protein CUT2 family (TC 3.A.1.2.-) {ECO:0000313|EMBL:CDC14305.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L1_007_000M1_scaffold_138_56
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

63583..65424
DNA (1842bp) protein (614aa)
Type II secretory pathway, pullulanase PulA and related glycosidases (EC:3.2.1.-)
Type II secretory pathway pullulanase PulA and related glycosidases n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P714_9FIRM
Type II secretory pathway pullulanase PulA and related glycosidases {ECO:0000313|EMBL:CDC14306.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_138_57
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

65421..65951
DNA (531bp) protein (177aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CR05_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL26301.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_138_58
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

65988..66614
DNA (627bp) protein (209aa)
Fructose-2,6-bisphosphatase (EC:5.4.2.1)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NQ26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14308.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_138_59
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


66907..68046
DNA (1140bp) protein (380aa)
Protein RecA n=1 Tax=Ruminococcus torques L2-14 RepID=D4M4Z1_9FIRM
protein RecA
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_138_60
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

68043..68687
DNA (645bp) protein (215aa)
Regulatory protein RecX n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSW5_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
recX; recombination regulator RecX
Displaying items 31-60 of 175 in total

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