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L1_007_000M1_scaffold_138

Search features with annotation key words

Displaying items 61-90 of 175 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_138_61
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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68834..70393
DNA (1560bp) protein (520aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Ribonuclease Y n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P720_9FIRM
metal dependent phosphohydrolase
L1_007_000M1_scaffold_138_62
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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70536..71075
DNA (540bp) protein (180aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
NTP pyrophosphohydrolases including oxidative damage repair enzymes {ECO:0000313|EMBL:CBL26304.1}; EC=3.6.1.13 {ECO:0000313|EMBL:CBL26304.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
NTP pyrophosphohydrolases including oxidative damage repair enzymes n=2 Tax=Clostridiales RepID=D4M4Z2_9FIRM
L1_007_000M1_scaffold_138_63
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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71199..71741
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NQ31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14313.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_138_64
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(71698..73047)
DNA (1350bp) protein (450aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P0T0_9FIRM
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:CDC14314.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L1_007_000M1_scaffold_138_65
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

73228..73689
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14315.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
transcriptional regulator, BadM/Rrf2 family
L1_007_000M1_scaffold_138_66
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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73765..74955
DNA (1191bp) protein (397aa)
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000313|EMBL:CBL26306.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Cysteine desulfurase NifS n=1 Tax=Ruminococcus torques L2-14 RepID=D4M4Z4_9FIRM
L1_007_000M1_scaffold_138_67
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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75028..75471
DNA (444bp) protein (148aa)
FeS cluster assembly scaffold protein NifU n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BRQ0_9FIRM
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:ETD17166.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L1_007_000M1_scaffold_138_68
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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75471..76547
DNA (1077bp) protein (359aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NQ34_9FIRM
L1_007_000M1_scaffold_138_69
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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76544..77365
DNA (822bp) protein (274aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:CBL26309.1}; EC=3.1.3.15 {ECO:0000313|EMBL:CBL26309.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Histidinol phosphate phosphatase HisJ family n=1 Tax=Ruminococcus torques L2-14 RepID=D4M4Z7_9FIRM
L1_007_000M1_scaffold_138_70
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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77523..78542
DNA (1020bp) protein (340aa)
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Ruminococcus torques L2-14 RepID=D4M4Z8_9FIRM
L1_007_000M1_scaffold_138_71
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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78698..79897
DNA (1200bp) protein (400aa)
3-phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Phosphoglycerate kinase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M4Z9_9FIRM
L1_007_000M1_scaffold_138_72
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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79985..80734
DNA (750bp) protein (250aa)
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Triosephosphate isomerase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M500_9FIRM
L1_007_000M1_scaffold_138_73
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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80990..81682
DNA (693bp) protein (231aa)
methylthioadenosine nucleosidase (EC:3.2.2.16 3.2.2.9)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196, ECO:0000313|EMBL:CBL26313.1};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Methylthioadenosine nucleosidase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M501_9FIRM
L1_007_000M1_scaffold_138_74
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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81841..83379
DNA (1539bp) protein (513aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NZ64_9FIRM
L1_007_000M1_scaffold_138_75
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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83614..84117
DNA (504bp) protein (168aa)
Transcription elongation factor GreA n=2 Tax=Clostridiales RepID=D4M503_9FIRM
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_138_76
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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84135..84839
DNA (705bp) protein (235aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q3G0_9FIRM
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CDC16477.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_138_77
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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84983..85222
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NWH3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC16478.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_138_78
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(85997..90238)
DNA (4242bp) protein (1414aa)
CoA-substrate-specific enzyme activase, putative n=1 Tax=Ruminococcus torques L2-14 RepID=D4M506_9FIRM
CoA-substrate-specific enzyme activase, putative {ECO:0000313|EMBL:CBL26318.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
CoA-substrate-specific enzyme activase, putative
L1_007_000M1_scaffold_138_79
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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90591..91436
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P0R6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC17015.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_138_80
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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91602..93038
DNA (1437bp) protein (479aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NY47_9FIRM
L1_007_000M1_scaffold_138_81
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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93186..93902
DNA (717bp) protein (239aa)
Predicted transcriptional regulators n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P0S0_9FIRM
Predicted transcriptional regulators {ECO:0000313|EMBL:CDC17020.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted transcriptional regulators
L1_007_000M1_scaffold_138_82
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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93895..95166
DNA (1272bp) protein (424aa)
Diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase {ECO:0000313|EMBL:CBL26322.1}; EC=4.1.1.20 {ECO:0000313|EMBL:CBL26322.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Diaminopimelate decarboxylase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M510_9FIRM
L1_007_000M1_scaffold_138_83
Blautia hydrogenotrophica CAG:147, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(95442..96539)
DNA (1098bp) protein (366aa)
Site-specific recombinase XerD n=1 Tax=Blautia hydrogenotrophica CAG:147 RepID=R5C701_9FIRM
Site-specific recombinase XerD {ECO:0000313|EMBL:CCX60522.1}; TaxID=1263061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia hydrogenotrophica CAG:147.;"
Site-specific recombinase XerD
L1_007_000M1_scaffold_138_84
Anaerostipes sp. 3_2_56FAA, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(96756..97385)
DNA (630bp) protein (210aa)
Glycerol-3-phosphate dehydrogenase n=1 Tax=Anaerostipes sp. 3_2_56FAA RepID=E5VXM7_9FIRM
Glycerol-3-phosphate dehydrogenase {ECO:0000313|EMBL:EFV21456.1}; TaxID=665937 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes sp. 3_2_56FAA.;"
hypothetical protein
L1_007_000M1_scaffold_138_85
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(97471..97935)
DNA (465bp) protein (155aa)
Pathogenicity island protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XD15_9FIRM
Pathogenicity island protein {ECO:0000313|EMBL:EFV20773.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
phage protein
L1_007_000M1_scaffold_138_86
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(97990..98298)
DNA (309bp) protein (103aa)
Transcriptional regulator n=2 Tax=unclassified Lachnospiraceae RepID=E5XD16_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:EFV20774.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
helix-turn-helix family protein
L1_007_000M1_scaffold_138_87
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

98461..98661
DNA (201bp) protein (67aa)
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XD17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV20775.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L1_007_000M1_scaffold_138_88
unknown

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comp(98742..98969)
DNA (228bp) protein (76aa)

This feature has no annotations

L1_007_000M1_scaffold_138_89
unknown

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99061..99303
DNA (243bp) protein (81aa)

This feature has no annotations

L1_007_000M1_scaffold_138_90
unknown

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99317..99688
DNA (372bp) protein (124aa)

This feature has no annotations

Displaying items 61-90 of 175 in total

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