ggKbase home page

L1_007_000M1_scaffold_139

Search features with annotation key words

Displaying items 31-60 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_139_31
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39885..40553)
DNA (669bp) protein (223aa)
Resolvase, N-terminal domain protein n=4 Tax=Parabacteroides RepID=A7AEC9_9PORP
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDN86405.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
serine type site-specific recombinase Mpi
L1_007_000M1_scaffold_139_32
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40914..41132
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WNT3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12943.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
transcriptional regulator
L1_007_000M1_scaffold_139_33
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

41211..42635
DNA (1425bp) protein (475aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X1C1_9PORP
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CDD12944.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RNA methyltransferase
L1_007_000M1_scaffold_139_34
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

42651..44045
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZXD3_9PORP
Transglycosylase SLT domain protein {ECO:0000313|EMBL:EDN86408.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glycoside hydrolase
L1_007_000M1_scaffold_139_35
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44087..44614)
DNA (528bp) protein (176aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X9E1_9PORP
hypothetical protein
L1_007_000M1_scaffold_139_36
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44611..45351)
DNA (741bp) protein (247aa)
PHP domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y3H8_9PORP
PHP domain protein {ECO:0000313|EMBL:CDD12947.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
metal-dependent phosphoesterase
L1_007_000M1_scaffold_139_37
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(45348..45686)
DNA (339bp) protein (113aa)
DRTGG domain protein n=2 Tax=Parabacteroides merdae RepID=A7AED5_9PORP
DRTGG domain protein {ECO:0000313|EMBL:EDN86411.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
thiamine biosynthesis protein ThiC
L1_007_000M1_scaffold_139_38
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(45673..47049)
DNA (1377bp) protein (459aa)
4Fe-4S binding domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X1C6_9PORP
4Fe-4S binding domain protein {ECO:0000313|EMBL:CDD12949.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ferredoxin 2
L1_007_000M1_scaffold_139_39
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(47052..47477)
DNA (426bp) protein (142aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=3 Tax=Parabacteroides RepID=A7AED7_9PORP
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CDD12950.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
anti-sigma regulatory factor
L1_007_000M1_scaffold_139_40
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(47496..47840)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X9E7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12951.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_139_41
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

47936..48778
DNA (843bp) protein (281aa)
pantothenate kinase (EC:2.7.1.33)
Pantothenate kinase n=2 Tax=Parabacteroides merdae RepID=K6BGU4_9PORP
Putative pantothenate kinase {ECO:0000313|EMBL:EDN86416.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L1_007_000M1_scaffold_139_42
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(48953..49384)
DNA (432bp) protein (144aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AEE1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11713.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_139_43
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

49580..50956
DNA (1377bp) protein (459aa)
Aminopeptidase P domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X621_9PORP
Aminopeptidase P domain protein {ECO:0000313|EMBL:CDD11716.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Xaa-Pro aminopeptidase
L1_007_000M1_scaffold_139_44
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

51196..52422
DNA (1227bp) protein (409aa)
Phosphoserine phosphatase SerB n=5 Tax=Parabacteroides RepID=A7AEE4_9PORP
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:CDD11719.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
phosphoserine phosphatase
L1_007_000M1_scaffold_139_45
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

52463..52765
DNA (303bp) protein (101aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5YQ26_9PORP
Stress responsive A/B barrel domain protein {ECO:0000313|EMBL:CDD11721.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_139_46
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

52781..53254
DNA (474bp) protein (158aa)
Oxidoreductase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WKP0_9PORP
Oxidoreductase {ECO:0000313|EMBL:CDD11723.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_139_47
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(53259..53987)
DNA (729bp) protein (243aa)
Mg2+ transporter-C family protein n=3 Tax=Parabacteroides RepID=A7AEE7_9PORP
Mg2+ transporter-C family protein {ECO:0000313|EMBL:CDD11724.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Mg2+ transport protein
L1_007_000M1_scaffold_139_48
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(54006..56165)
DNA (2160bp) protein (720aa)
Alpha-galactosidase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WQS5_9PORP
Alpha-galactosidase {ECO:0000313|EMBL:CDD11725.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
alpha-glycosidase
L1_007_000M1_scaffold_139_49
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(56368..57279)
DNA (912bp) protein (304aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Dihydroorotate dehydrogenase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X629_9PORP
dihydroorotate dehydrogenase 1B
L1_007_000M1_scaffold_139_50
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(57267..58046)
DNA (780bp) protein (260aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XZS0_9PORP
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
dihydroorotate dehydrogenase electron transfer subunit
L1_007_000M1_scaffold_139_51
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(58109..58558)
DNA (450bp) protein (150aa)
DNA-binding helix-turn-helix protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WKP5_9PORP
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDD11728.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_139_52
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(59405..60427)
DNA (1023bp) protein (341aa)
DNA polymerase III delta subunit n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WXQ9_9PORP
DNA polymerase III delta subunit {ECO:0000313|EMBL:CDD11729.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_139_53
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(60452..61228)
DNA (777bp) protein (259aa)
AMP nucleosidase (EC:3.2.2.4)
Uncharacterized protein n=7 Tax=Parabacteroides RepID=K5Y3U6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN16099.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L1_007_000M1_scaffold_139_54
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

61283..61732
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X632_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11731.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_139_55
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(62149..62334)
DNA (186bp) protein (62aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5YQ15_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11732.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_139_56
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

62367..62561
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WKP9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11733.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_139_57
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(62566..63855)
DNA (1290bp) protein (430aa)
Na(+)-translocating NADH-quinone reductase subunit F {ECO:0000256|HAMAP-Rule:MF_00430}; Short=Na(+)-NQR subunit F {ECO:0000256|HAMAP-Rule:MF_00430};; Short=Na(+)-translocating NQR subunit F {ECO:0000256|HAMAP-Rule:MF_00430};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00430};; NQR complex subunit F {ECO:0000256|HAMAP-Rule:MF_00430}; NQR-1 subunit F {ECO:0000256|HAMAP-Rule:MF_00430}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
NADH:ubiquinone oxidoreductase, F subunit n=4 Tax=Parabacteroides RepID=A7AEF7_9PORP
Na(+)-translocating NADH-quinone reductase subunit F
L1_007_000M1_scaffold_139_58
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(63883..64500)
DNA (618bp) protein (206aa)
Na(+)-translocating NADH-quinone reductase subunit E {ECO:0000256|HAMAP-Rule:MF_00429, ECO:0000256|SAAS:SAAS00170325}; Short=Na(+)-NQR subunit E {ECO:0000256|HAMAP-Rule:MF_00429};; Short=Na(+)-translocating NQR subunit E {ECO:0000256|HAMAP-Rule:MF_00429};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00429, ECO:0000256|SAAS:SAAS00179335};; NQR complex subunit E {ECO:0000256|HAMAP-Rule:MF_00429}; NQR-1 subunit E {ECO:0000256|HAMAP-Rule:MF_00429}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
NADH:ubiquinone oxidoreductase, E subunit n=4 Tax=Parabacteroides RepID=A7AEF8_9PORP
Na(+)-translocating NADH-quinone reductase subunit E
L1_007_000M1_scaffold_139_59
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(64526..65155)
DNA (630bp) protein (210aa)
Na(+)-translocating NADH-quinone reductase subunit D {ECO:0000256|HAMAP-Rule:MF_00428, ECO:0000256|SAAS:SAAS00170009}; Short=Na(+)-NQR subunit D {ECO:0000256|HAMAP-Rule:MF_00428};; Short=Na(+)-translocating NQR subunit D {ECO:0000256|HAMAP-Rule:MF_00428};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00428, ECO:0000256|SAAS:SAAS00179330};; NQR complex subunit D {ECO:0000256|HAMAP-Rule:MF_00428}; NQR-1 subunit D {ECO:0000256|HAMAP-Rule:MF_00428}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
NADH:ubiquinone oxidoreductase, D subunit n=4 Tax=Parabacteroides RepID=A7AEF9_9PORP
Na(+)-translocating NADH-quinone reductase subunit D
L1_007_000M1_scaffold_139_60
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(65163..65981)
DNA (819bp) protein (273aa)
Na(+)-translocating NADH-quinone reductase subunit C {ECO:0000256|HAMAP-Rule:MF_00427}; Short=Na(+)-NQR subunit C {ECO:0000256|HAMAP-Rule:MF_00427};; Short=Na(+)-translocating NQR subunit C {ECO:0000256|HAMAP-Rule:MF_00427};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00427};; NQR complex subunit C {ECO:0000256|HAMAP-Rule:MF_00427}; NQR-1 subunit C {ECO:0000256|HAMAP-Rule:MF_00427}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit n=3 Tax=Parabacteroides RepID=A7AEG0_9PORP
Na(+)-translocating NADH-quinone reductase subunit C
Displaying items 31-60 of 81 in total

View Taxonomy