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L1_007_000M1_scaffold_156

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Displaying items 31-60 of 133 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_156_31
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22530..23027
DNA (498bp) protein (166aa)
30S ribosomal protein S5 n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E3L2_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
rpsE; 30S ribosomal protein S5
L1_007_000M1_scaffold_156_32
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23045..23215
DNA (171bp) protein (57aa)
LSU ribosomal protein L30P n=2 Tax=Ruminococcus RepID=D4L6B4_9FIRM
LSU ribosomal protein L30P
50S ribosomal protein L30 {ECO:0000256|SAAS:SAAS00082687}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_156_33
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23234..23677
DNA (444bp) protein (148aa)
50S ribosomal protein L15 n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSZ3_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
LSU ribosomal protein L15P
L1_007_000M1_scaffold_156_34
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23678..24988
DNA (1311bp) protein (437aa)
Protein translocase subunit SecY n=2 Tax=root RepID=R5DWS1_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
preprotein translocase subunit SecY
L1_007_000M1_scaffold_156_35
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25012..25644
DNA (633bp) protein (211aa)
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Adenylate kinase n=3 Tax=root RepID=D4L6B6_9FIRM
L1_007_000M1_scaffold_156_36
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25648..26400
DNA (753bp) protein (251aa)
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Methionine aminopeptidase n=3 Tax=root RepID=D4L6B7_9FIRM
L1_007_000M1_scaffold_156_37
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26411..26656
DNA (246bp) protein (82aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DSY0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15163.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_156_38
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26661..26879
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=3 Tax=root RepID=D4L6B9_9FIRM
bacterial translation initiation factor 1 (bIF-1)
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_156_39
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26921..27034
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=3 Tax=Clostridiales RepID=D4L6C0_9FIRM
LSU ribosomal protein L36P
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
L1_007_000M1_scaffold_156_40
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27089..27457
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=3 Tax=root RepID=D4L6C1_9FIRM
SSU ribosomal protein S13P
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_156_41
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27473..27874
DNA (402bp) protein (134aa)
30S ribosomal protein S11 n=2 Tax=Ruminococcus RepID=D4L6C2_9FIRM
SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_156_42
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27901..28503
DNA (603bp) protein (201aa)
30S ribosomal protein S4 n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6C3_9FIRM
SSU ribosomal protein S4P
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_156_43
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28578..29531
DNA (954bp) protein (318aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059, ECO:0000313|EMBL:CBL15169.1}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059, ECO:0000313|EMBL:CBL15169.1};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=root RepID=D4L6C4_9FIRM
L1_007_000M1_scaffold_156_44
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


29604..29945
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=2 Tax=Ruminococcus RepID=D4L6C5_9FIRM
LSU ribosomal protein L17P
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_156_45
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30299..31249)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E3G8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83332.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_156_46
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31497..33485
DNA (1989bp) protein (663aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E590_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83331.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
cotH; similar to spore coat protein CotH
L1_007_000M1_scaffold_156_47
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33693..35135
DNA (1443bp) protein (481aa)
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:CBL15172.1}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:CBL15172.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Pyruvate kinase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6C7_9FIRM
L1_007_000M1_scaffold_156_48
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35137..35646
DNA (510bp) protein (170aa)
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:CBL15173.1}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:CBL15173.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Shikimate kinase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6C8_9FIRM
L1_007_000M1_scaffold_156_49
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35761..36420)
DNA (660bp) protein (220aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6C9_9FIRM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CBL15174.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_156_50
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36410..36850)
DNA (441bp) protein (147aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E3G1_9FIRM
Anti-sigma F factor {ECO:0000313|EMBL:CCX83327.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_156_51
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36847..37149)
DNA (303bp) protein (101aa)
Anti-sigma factor antagonist n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E585_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
anti-sigma-factor antagonist
L1_007_000M1_scaffold_156_52
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37250..38560)
DNA (1311bp) protein (437aa)
folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
Folylpolyglutamate synthase/dihydrofolate synthase {ECO:0000313|EMBL:CBL15176.1}; EC=6.3.2.17 {ECO:0000313|EMBL:CBL15176.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Folylpolyglutamate synthase/dihydrofolate synthase n=2 Tax=root RepID=D4L6D1_9FIRM
L1_007_000M1_scaffold_156_53
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38561..39385)
DNA (825bp) protein (275aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DWM0_9FIRM
hypothetical protein
L1_007_000M1_scaffold_156_54
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39382..40122)
DNA (741bp) protein (247aa)
Predicted O-methyltransferase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6D2_9FIRM
Predicted O-methyltransferase
Predicted O-methyltransferase {ECO:0000313|EMBL:CBL15177.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_156_55
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40199..40369)
DNA (171bp) protein (57aa)
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (Chain I) n=2 Tax=Ruminococcus RepID=D4L6D3_9FIRM
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (Chain I) {ECO:0000313|EMBL:CCX83321.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_156_56
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40514..41380)
DNA (867bp) protein (289aa)
Uncharacterized homolog of PSP1 n=2 Tax=Ruminococcus RepID=D4L6D4_9FIRM
Uncharacterized homolog of PSP1
Uncharacterized homolog of PSP1 {ECO:0000313|EMBL:CBL15179.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_156_57
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41368..42231)
DNA (864bp) protein (288aa)
putative DNA polymerase III, delta' subunit (EC:2.7.7.7)
Uncharacterized protein n=2 Tax=root RepID=R5DT12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83318.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_156_58
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42293..42763)
DNA (471bp) protein (157aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Phosphoesterase, MJ0936 family n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6D5_9FIRM
phosphoesterase, MJ0936 family
L1_007_000M1_scaffold_156_59
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42821..43057
DNA (237bp) protein (79aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DWK9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15181.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_156_60
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

43059..43412
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E567_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83311.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
Displaying items 31-60 of 133 in total

View Taxonomy