ggKbase home page

L1_007_000M1_scaffold_169

Search features with annotation key words

Displaying items 1-30 of 143 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_169_1
Bifidobacterium angulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(54..749)
DNA (696bp) protein (232aa)
ABC-2 family transporter protein n=1 Tax=Olsenella profusa F0195 RepID=U2VB98_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KJX91357.1}; TaxID=1683 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium angulatum.;"
lantibiotic ABC transporter permease
L1_007_000M1_scaffold_169_2
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(749..1519)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8D7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75511.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
bacteriocin ABC transporter permease
L1_007_000M1_scaffold_169_3
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1516..2244)
DNA (729bp) protein (243aa)
Lantibiotic protection ABC transporter, ATP-binding subunit n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FFK7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:KGI75512.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
multidrug ABC transporter ATPase
L1_007_000M1_scaffold_169_4
unknown

Not on your lists

2407..2601
DNA (195bp) protein (65aa)

This feature has no annotations

L1_007_000M1_scaffold_169_5
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

2607..3149
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00036DE882
Uncharacterized protein {ECO:0000313|EMBL:KGI75514.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L1_007_000M1_scaffold_169_6
unknown

Not on your lists

3361..3606
DNA (246bp) protein (82aa)

This feature has no annotations

L1_007_000M1_scaffold_169_7
unknown

Not on your lists

comp(3785..4246)
DNA (462bp) protein (154aa)

This feature has no annotations

L1_007_000M1_scaffold_169_8
unknown

Not on your lists

4626..4868
DNA (243bp) protein (81aa)

This feature has no annotations

L1_007_000M1_scaffold_169_9
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

5172..5510
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WL82_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX68405.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
ATPase AAA
L1_007_000M1_scaffold_169_10
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

5747..6295
DNA (549bp) protein (183aa)
Flavin reductase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8C0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75491.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L1_007_000M1_scaffold_169_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6490..6864)
DNA (375bp) protein (125aa)
Uncharacterized protein n=4 Tax=Bifidobacterium longum RepID=I3AVH7_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ23120.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_007_000M1_scaffold_169_12
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6874..8607)
DNA (1734bp) protein (578aa)
Uncharacterized conserved protein n=1 Tax=Collinsella sp. CAG:398 RepID=R7ALV7_9ACTN
Uncharacterized conserved protein {ECO:0000313|EMBL:CDD43537.1}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
hypothetical protein
L1_007_000M1_scaffold_169_13
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

9051..9188
DNA (138bp) protein (46aa)
Flavin reductase n=1 Tax=Collinsella sp. CAG:166 RepID=R6A5M8_9ACTN
Flavin reductase {ECO:0000313|EMBL:CDA36422.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
L1_007_000M1_scaffold_169_14
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9297..10391)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8B9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75492.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
Archaeal ATPase.
L1_007_000M1_scaffold_169_15
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(10640..12880)
DNA (2241bp) protein (747aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase/topoisomerase IV A subunit n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZII7_9ACTN
DNA gyrase/topoisomerase IV A subunit {ECO:0000313|EMBL:CDA36424.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
L1_007_000M1_scaffold_169_16
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12926..14923)
DNA (1998bp) protein (666aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase, B subunit, C-terminal domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8B6_9ACTN
DNA gyrase, B subunit, C-terminal domain protein {ECO:0000313|EMBL:EBA40132.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
L1_007_000M1_scaffold_169_17
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15317..19681)
DNA (4365bp) protein (1455aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8B3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75497.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
L1_007_000M1_scaffold_169_18
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19838..20842)
DNA (1005bp) protein (335aa)
Transcriptional regulator, LuxR family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8B2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75498.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
L1_007_000M1_scaffold_169_19
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20911..22062)
DNA (1152bp) protein (384aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8A5_9ACTN
Signal transduction histidine kinase
L1_007_000M1_scaffold_169_20
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22059..22733)
DNA (675bp) protein (225aa)
Response regulator receiver domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZA94_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75500.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_000M1_scaffold_169_21
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

22996..23865
DNA (870bp) protein (290aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZJ32_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75502.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
4Fe-4S ferredoxin
L1_007_000M1_scaffold_169_22
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

23895..24866
DNA (972bp) protein (324aa)
Redoxin family protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZJ28_9ACTN
Redoxin family protein {ECO:0000313|EMBL:CDA36599.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
redoxin domain-containing protein
L1_007_000M1_scaffold_169_23
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

25121..28375
DNA (3255bp) protein (1085aa)
ABC transporter, ATP-binding protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E8A1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75504.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
ABC transporter-like protein
L1_007_000M1_scaffold_169_24
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

28429..29382
DNA (954bp) protein (318aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
tRNA-dihydrouridine synthase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZB36_9ACTN
tRNA-U20a,U20b-dihydrouridine synthase
L1_007_000M1_scaffold_169_25
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29526..29792)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZML9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35551.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
L1_007_000M1_scaffold_169_26
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(30630..30875)
DNA (246bp) protein (82aa)
Glutaredoxin n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZIU9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75450.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
glutaredoxin
L1_007_000M1_scaffold_169_27
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(30927..31754)
DNA (828bp) protein (276aa)
TipAS antibiotic-recognition domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZA10_9ACTN
TipAS antibiotic-recognition domain protein {ECO:0000313|EMBL:CDA36503.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Predicted transcriptional regulators
L1_007_000M1_scaffold_169_28
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

31887..32633
DNA (747bp) protein (249aa)
Methyltransferase YaeB family n=1 Tax=Collinsella sp. CAG:166 RepID=R6A5Z4_9ACTN
Methyltransferase YaeB family {ECO:0000313|EMBL:CDA36502.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
conserved hypothetical protein TIGR00104
L1_007_000M1_scaffold_169_29
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

32746..33960
DNA (1215bp) protein (405aa)
PLP-dependent aminotransferase (EC:4.4.1.8)
Aminotransferase class I/II n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZQ85_9ACTN
Aminotransferase class I/II {ECO:0000313|EMBL:CDA36501.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
L1_007_000M1_scaffold_169_30
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

34105..34974
DNA (870bp) protein (290aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E886_9ACTN
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EBA40102.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
Displaying items 1-30 of 143 in total

View Taxonomy