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L1_007_000M1_scaffold_241

Search features with annotation key words

Displaying items 1-30 of 112 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_241_1
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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167..715
DNA (549bp) protein (183aa)
Multimeric flavodoxin WrbA n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7I6_9FIRM
Multimeric flavodoxin WrbA
Multimeric flavodoxin WrbA {ECO:0000313|EMBL:CBL15581.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_241_2
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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805..1326
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS38_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83075.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_241_3
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1430..1777
DNA (348bp) protein (116aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
mRNA interferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DW03_9FIRM
transcriptional modulator of MazE/toxin MazF
L1_007_000M1_scaffold_241_4
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1890..2558)
DNA (669bp) protein (223aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSA9_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCX83073.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
helix-turn-helix domain-containing protein
L1_007_000M1_scaffold_241_5
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2765..3391
DNA (627bp) protein (209aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73 5.4.2.1)
Fructose-2,6-bisphosphatase {ECO:0000313|EMBL:CBL15583.1}; EC=3.1.3.73 {ECO:0000313|EMBL:CBL15583.1};; EC=5.4.2.1 {ECO:0000313|EMBL:CBL15583.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Fructose-2,6-bisphosphatase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7I8_9FIRM
L1_007_000M1_scaffold_241_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3493..4563
DNA (1071bp) protein (357aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
3-isopropylmalate dehydrogenase n=2 Tax=Ruminococcus RepID=D4L7I9_9FIRM
L1_007_000M1_scaffold_241_7
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4564..5298
DNA (735bp) protein (245aa)
Capsular polysaccharide biosynthesis protein (EC:3.1.3.48)
Capsular polysaccharide biosynthesis protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS36_9FIRM
Capsular polysaccharide biosynthesis protein {ECO:0000313|EMBL:CCX83070.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_241_8

Not on your lists

comp(5451..5882)
DNA (432bp) protein (144aa)
FeS cluster assembly scaffold protein NifU, Clostridium type n=3 Tax=root RepID=D4L7J0_9FIRM
FeS cluster assembly scaffold protein NifU, Clostridium type
FeS cluster assembly scaffold protein NifU, Clostridium type {ECO:0000313|EMBL:EKC51389.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_241_9
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5952..7139)
DNA (1188bp) protein (396aa)
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Cysteine desulfurase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7J1_9FIRM
L1_007_000M1_scaffold_241_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7169..7606)
DNA (438bp) protein (146aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E2R2_9FIRM
L1_007_000M1_scaffold_241_11
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8133..10037
DNA (1905bp) protein (635aa)
rnjA; Ribonuclease J 1 (EC:3.1.-.-)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E4J7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83066.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_241_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10090..12045
DNA (1956bp) protein (652aa)
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS33_9FIRM
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain {ECO:0000313|EMBL:CCX83065.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L1_007_000M1_scaffold_241_13
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


12062..12508
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=2 Tax=Ruminococcus RepID=D4L7J3_9FIRM
LSU ribosomal protein L9P
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_241_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12524..13897
DNA (1374bp) protein (458aa)
primary replicative DNA helicase (EC:3.6.1.-)
Primary replicative DNA helicase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSA0_9FIRM
Primary replicative DNA helicase {ECO:0000313|EMBL:CCX83063.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_241_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13890..15218
DNA (1329bp) protein (443aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain (EC:6.3.4.-)
tRNA(Ile)-lysidine synthase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E2Q9_9FIRM
L1_007_000M1_scaffold_241_16
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15221..15757
DNA (537bp) protein (179aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:CBL15591.1}; EC=2.4.2.8 {ECO:0000313|EMBL:CBL15591.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Hypoxanthine phosphoribosyltransferase n=2 Tax=Ruminococcus RepID=D4L7J6_9FIRM
L1_007_000M1_scaffold_241_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15844..17859
DNA (2016bp) protein (672aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ftsH; Cell division protease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=2 Tax=root RepID=R5DS31_9FIRM
L1_007_000M1_scaffold_241_18
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17972..20791
DNA (2820bp) protein (940aa)
UvrABC system protein A n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7J7_9FIRM
Excinuclease ABC subunit A
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_241_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20908..21165
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS96_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83058.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_241_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21170..21406
DNA (237bp) protein (79aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E2Q6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15593.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_241_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21399..22178
DNA (780bp) protein (260aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E4J0_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CCX83056.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
N-acetylmuramoyl-L-alanine amidase
L1_007_000M1_scaffold_241_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22615..24012)
DNA (1398bp) protein (466aa)
Putative efflux protein MATE family n=2 Tax=root RepID=R5DVY3_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CCX83054.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
putative efflux protein, MATE family
L1_007_000M1_scaffold_241_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24375..24581
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83053.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_241_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24586..24885
DNA (300bp) protein (100aa)
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E2Q3_9FIRM
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog {ECO:0000313|EMBL:CCX83052.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
L1_007_000M1_scaffold_241_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24882..25490)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E4I7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83051.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_241_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25732..27045
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DS21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83050.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_241_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27371..29317
DNA (1947bp) protein (649aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=2 Tax=root RepID=R5DVX8_9FIRM
L1_007_000M1_scaffold_241_28
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29345..30139
DNA (795bp) protein (265aa)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7K6_9FIRM
D-alanyl-D-alanine carboxypeptidase
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CBL15601.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_241_29
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


30229..30432
DNA (204bp) protein (68aa)
50S ribosomal protein L31 n=2 Tax=Ruminococcus RepID=D4L7K7_9FIRM
LSU ribosomal protein L31P
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_241_30
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30535..31164
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E4I2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83046.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
conserved hypothetical protein TIGR00257
Displaying items 1-30 of 112 in total

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