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L1_007_000M1_scaffold_248

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_248_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3..164
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZTN8_9PORP
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EDN86898.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
O-antigen polymerase
L1_007_000M1_scaffold_248_2
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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302..454
DNA (153bp) protein (51aa)
50S ribosomal protein L34 n=18 Tax=Bacteroidales RepID=A7AE63_9PORP
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
50S ribosomal protein L34
L1_007_000M1_scaffold_248_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

575..1207
DNA (633bp) protein (211aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B3D1_9PORP
PASTA domain protein {ECO:0000313|EMBL:CDD11267.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_248_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1210..2289
DNA (1080bp) protein (360aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Pseudouridine synthase n=3 Tax=Parabacteroides RepID=A7AE65_9PORP
ribosomal large subunit pseudouridine synthase D
L1_007_000M1_scaffold_248_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2293..3270
DNA (978bp) protein (326aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ddl; D-alanyl-alanine synthetase A (EC:6.3.2.4)
D-alanine--D-alanine ligase n=2 Tax=Parabacteroides RepID=K6BQA6_9PORP
L1_007_000M1_scaffold_248_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3360..4517
DNA (1158bp) protein (386aa)
Acyltransferase n=3 Tax=Parabacteroides RepID=A7AE67_9PORP
Acyltransferase {ECO:0000313|EMBL:CDD11264.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_248_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4626..8594)
DNA (3969bp) protein (1323aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B2M5_9PORP
Response regulator receiver domain protein {ECO:0000313|EMBL:EDN86905.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
two-component system sensor histidine kinase/response regulator
L1_007_000M1_scaffold_248_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8818..10050
DNA (1233bp) protein (411aa)
Nucleoside transporter n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X4R6_9PORP
Nucleoside transporter {ECO:0000313|EMBL:CDD11261.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
major facilitator transporter
L1_007_000M1_scaffold_248_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10634..11842
DNA (1209bp) protein (403aa)
Ornithine aminotransferase n=3 Tax=Parabacteroides RepID=A7AE71_9PORP
Ornithine aminotransferase {ECO:0000313|EMBL:EDN86908.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
acetylornithine aminotransferase
L1_007_000M1_scaffold_248_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11849..12745
DNA (897bp) protein (299aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Arginase n=2 Tax=Parabacteroides RepID=K5ZCM3_9PORP
arginase
L1_007_000M1_scaffold_248_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12724..12834)
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WJE5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11258.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_248_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12850..15153)
DNA (2304bp) protein (768aa)
Outer membrane protein OMP85 family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X4R3_9PORP
Outer membrane protein OMP85 family {ECO:0000313|EMBL:CDD11256.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_248_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15150..19778)
DNA (4629bp) protein (1543aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Y6Y3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08947.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L1_007_000M1_scaffold_248_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19953..20741
DNA (789bp) protein (263aa)
Inositol monophosphatase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XC74_9PORP
Inositol monophosphatase family protein {ECO:0000313|EMBL:CDD13956.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
inositol-1-monophosphatase
L1_007_000M1_scaffold_248_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21146..22684)
DNA (1539bp) protein (513aa)
Bacterial group 2 Ig-like protein n=2 Tax=Parabacteroides merdae RepID=A7AE79_9PORP
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:EDN86916.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative lipoprotein
L1_007_000M1_scaffold_248_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22711..25452)
DNA (2742bp) protein (914aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZTM4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08951.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
TonB-dependent receptor
L1_007_000M1_scaffold_248_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25526..25903
DNA (378bp) protein (126aa)
Thioesterase family protein n=4 Tax=Parabacteroides RepID=A7AE80_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08952.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
Thioesterase superfamily
L1_007_000M1_scaffold_248_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26469..26591)
DNA (123bp) protein (41aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6AQN5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13758.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_248_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26788..29223
DNA (2436bp) protein (812aa)
TonB-dependent receptor n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y5Q3_9PORP
TonB-dependent receptor {ECO:0000313|EMBL:CDD13757.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB-dependent receptor
L1_007_000M1_scaffold_248_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29451..30656
DNA (1206bp) protein (402aa)
Sigma factor regulatory protein FecR/PupR family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XBL2_9PORP
Sigma factor regulatory protein FecR/PupR family {ECO:0000313|EMBL:CDD13756.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_248_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30754..34113
DNA (3360bp) protein (1120aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Parabacteroides RepID=A7A9F4_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD13755.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Outer membrane receptor proteins, mostly Fe transport
L1_007_000M1_scaffold_248_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34143..36101
DNA (1959bp) protein (653aa)
SusD family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X3P1_9PORP
SusD family protein {ECO:0000313|EMBL:CDD13754.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ragB/SusD family protein
L1_007_000M1_scaffold_248_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36161..36697)
DNA (537bp) protein (179aa)
Sigma-70 family RNA polymerase sigma factor n=2 Tax=Parabacteroides RepID=K6AQN2_9PORP
Sigma-70 region 2 {ECO:0000313|EMBL:CDD13753.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
putative RNA polymerase ECF-type sigma factor
L1_007_000M1_scaffold_248_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

37527..38615
DNA (1089bp) protein (363aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=A7A9F9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88549.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L1_007_000M1_scaffold_248_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

39089..40606
DNA (1518bp) protein (506aa)
acetyl-CoA carboxylase (EC:6.4.1.2)
Acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y607_9PORP
Acetyl-CoA carboxylase biotin carboxylase subunit {ECO:0000313|EMBL:CDD13867.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_248_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40620..41159
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5Y6Z6_9PORP
Biotin-requiring enzyme {ECO:0000313|EMBL:CDD13866.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
biotin/lipoyl attachment domain-containing protein
L1_007_000M1_scaffold_248_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

41137..42669
DNA (1533bp) protein (511aa)
propionyl-CoA carboxylase (EC:6.4.1.3)
Carboxyl transferase domain protein n=2 Tax=Parabacteroides RepID=A7A9G3_9PORP
Carboxyl transferase domain protein {ECO:0000313|EMBL:CDD13865.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L1_007_000M1_scaffold_248_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

42824..44173
DNA (1350bp) protein (450aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7A9G4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08964.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L1_007_000M1_scaffold_248_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44212..44712)
DNA (501bp) protein (167aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ribonucleoside-triphosphate reductase class III activase subunit (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=4 Tax=Parabacteroides RepID=A7A9G5_9PORP
L1_007_000M1_scaffold_248_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44817..47024)
DNA (2208bp) protein (736aa)
anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y600_9PORP
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDD13862.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Displaying items 1-30 of 54 in total

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