ggKbase home page

L1_007_000M1_scaffold_266

Search features with annotation key words

Displaying items 1-30 of 120 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_266_1
unknown

Not on your lists

358..474
DNA (117bp) protein (39aa)

This feature has no annotations

L1_007_000M1_scaffold_266_2
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

644..856
DNA (213bp) protein (71aa)
Cna protein B-type domain n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NVC3_9FIRM
Cna protein B-type domain {ECO:0000313|EMBL:CDC15155.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_266_3
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

995..5767
DNA (4773bp) protein (1591aa)
Cna protein B-type domain n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NVC3_9FIRM
Cna protein B-type domain {ECO:0000313|EMBL:CDC15155.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Cna protein B-type domain.
L1_007_000M1_scaffold_266_4
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5848..7539
DNA (1692bp) protein (564aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSK7_9FIRM
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:CDC15153.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
surface protein
L1_007_000M1_scaffold_266_5
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7662..8624
DNA (963bp) protein (321aa)
Sortase family protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P9D0_9FIRM
Sortase family protein {ECO:0000313|EMBL:CDC15151.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
LPXTG-site transpeptidase (sortase) family protein
L1_007_000M1_scaffold_266_6
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8570..9556
DNA (987bp) protein (329aa)
Sortase family protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P353_9FIRM
Sortase family protein {ECO:0000313|EMBL:CDC15149.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
LPXTG-site transpeptidase (sortase) family protein
L1_007_000M1_scaffold_266_7
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9613..10920
DNA (1308bp) protein (436aa)
Predicted membrane protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3I4_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBL25796.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_266_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10951..11838
DNA (888bp) protein (296aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3I3_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL25795.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_266_9
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11972..13468)
DNA (1497bp) protein (499aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3I2_9FIRM
L1_007_000M1_scaffold_266_10
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13884..14735
DNA (852bp) protein (284aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
ABC-type cobalt transport system, ATPase component n=2 Tax=Clostridiales RepID=D4M3I1_9FIRM
ABC-type cobalt transport system, ATPase component
L1_007_000M1_scaffold_266_11
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14720..15586
DNA (867bp) protein (289aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
ABC-type cobalt transport system, ATPase component n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3I0_9FIRM
ABC-type cobalt transport system, ATPase component
L1_007_000M1_scaffold_266_12
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15583..16407
DNA (825bp) protein (275aa)
Energy-coupling factor transporter transmembrane protein EcfT n=2 Tax=Clostridiales RepID=D4M3H9_9FIRM
ABC-type cobalt transport system, permease component CbiQ and related transporters
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_266_13
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16566..17318
DNA (753bp) protein (251aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSJ1_9FIRM
L1_007_000M1_scaffold_266_14
unknown

Not on your lists

17338..17496
DNA (159bp) protein (53aa)

This feature has no annotations

L1_007_000M1_scaffold_266_15
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17733..18578
DNA (846bp) protein (282aa)
Transcriptional antiterminator BglG family n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PZK3_9FIRM
Transcriptional antiterminator BglG family {ECO:0000313|EMBL:CDC15132.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
transcriptional antiterminator, BglG family
L1_007_000M1_scaffold_266_16
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18791..20254
DNA (1464bp) protein (488aa)
PTS system N-acetylglucosamine-specific IIB component Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component Glc family (TC 4.A.1.1.2) n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NVA0_9FIRM
PTS system N-acetylglucosamine-specific IIB component Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component Glc family (TC 4.A.1.1.2) {ECO:0000313|EMBL:CDC15130.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
L1_007_000M1_scaffold_266_17
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21012..22235
DNA (1224bp) protein (408aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Tyrosine--tRNA ligase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3H5_9FIRM
L1_007_000M1_scaffold_266_18
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22369..22875
DNA (507bp) protein (169aa)
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3H4_9FIRM
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family {ECO:0000313|EMBL:CBL25786.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_266_19
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23061..23375
DNA (315bp) protein (105aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R6PZJ5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC15122.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_266_20
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23470..24216
DNA (747bp) protein (249aa)
Predicted permeases n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NV92_9FIRM
Predicted permeases {ECO:0000313|EMBL:CDC15120.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted permeases
L1_007_000M1_scaffold_266_21
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24370..25152)
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3H1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL25783.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_266_22
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25452..26156
DNA (705bp) protein (235aa)
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3H0_9FIRM
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CBL25782.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_266_23
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26303..26524)
DNA (222bp) protein (74aa)
Putative permease n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PAE4_9FIRM
Putative permease {ECO:0000313|EMBL:CDC17704.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
putative xanthine permease
L1_007_000M1_scaffold_266_24
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26571..27077)
DNA (507bp) protein (169aa)
Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P2N4_9FIRM
Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs {ECO:0000313|EMBL:CDC17705.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs
L1_007_000M1_scaffold_266_25
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27070..27957)
DNA (888bp) protein (296aa)
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs (EC:1.17.1.4)
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs {ECO:0000313|EMBL:CBL25773.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CBL25773.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3G1_9FIRM
L1_007_000M1_scaffold_266_26
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27950..30259)
DNA (2310bp) protein (770aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase molybdenum binding subunit apoprotein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q6X5_9FIRM
Xanthine dehydrogenase molybdenum binding subunit apoprotein {ECO:0000313|EMBL:CDC17707.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_266_27
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

comp(30381..30764)
DNA (384bp) protein (128aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5Y169_9FIRM
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:CDA14946.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
Cyclic nucleotide-binding domain.
L1_007_000M1_scaffold_266_28
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31140..31949
DNA (810bp) protein (270aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CBL25770.1}; EC=2.7.4.7 {ECO:0000313|EMBL:CBL25770.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Phosphomethylpyrimidine kinase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3F8_9FIRM
L1_007_000M1_scaffold_266_29
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31953..33125
DNA (1173bp) protein (391aa)
Probable hydroxymethylpyrimidine transporter CytX n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3F7_9FIRM
probable hydroxymethylpyrimidine transporter CytX
Probable hydroxymethylpyrimidine transporter CytX {ECO:0000313|EMBL:CBL25769.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_266_30
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33130..34449)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P2N8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC17710.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
Displaying items 1-30 of 120 in total

View Taxonomy