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L1_007_000M1_scaffold_278

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_278_1
unknown

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comp(137..580)
DNA (444bp) protein (148aa)

This feature has no annotations

L1_007_000M1_scaffold_278_2
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(595..1128)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6RGH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC33537.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
hypothetical protein
L1_007_000M1_scaffold_278_3
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1718..2401
DNA (684bp) protein (228aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UBH1_RUMA7
Nicotinamide mononucleotide transporter {ECO:0000313|EMBL:EXM39971.1}; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
nicotinamide mononucleotide transporter PnuC
L1_007_000M1_scaffold_278_4
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2461..2739)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IL82_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB51078.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
hypothetical protein
L1_007_000M1_scaffold_278_5
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2817..3389)
DNA (573bp) protein (191aa)
RNA polymerase sigma factor n=1 Tax=Eubacterium sp. CAG:251 RepID=R6QBY8_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
LuxR family transcriptional regulator
L1_007_000M1_scaffold_278_6
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3487..4584)
DNA (1098bp) protein (366aa)
Ribosome-binding ATPase YchF n=1 Tax=Eubacterium sp. CAG:251 RepID=R6QK13_9FIRM
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
GTP-binding protein YchF
L1_007_000M1_scaffold_278_7
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4762..6426
DNA (1665bp) protein (555aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
Acetolactate synthase n=1 Tax=Eubacterium sp. CAG:251 RepID=R6Q9H6_9FIRM
acetolactate synthase
L1_007_000M1_scaffold_278_8
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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6439..6948
DNA (510bp) protein (170aa)
Acetolactate synthase small subunit n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BBT9_9FIRM
Acetolactate synthase small subunit {ECO:0000313|EMBL:CDD62747.1}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
acetolactate synthase small subunit
L1_007_000M1_scaffold_278_9
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6984..8246
DNA (1263bp) protein (421aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Eubacterium sp. CAG:251 RepID=R6QR93_9FIRM
L1_007_000M1_scaffold_278_10
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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8343..8822
DNA (480bp) protein (160aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BCZ6_9FIRM
L1_007_000M1_scaffold_278_11
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8841..9254
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6IXC9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB51084.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
L1_007_000M1_scaffold_278_12
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9436..9936
DNA (501bp) protein (167aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
ruvC; Crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Eubacterium sp. CAG:251 RepID=R6RFT1_9FIRM
L1_007_000M1_scaffold_278_13
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9953..10555
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Eubacterium sp. CAG:251 RepID=R6QR87_9FIRM
Holliday junction DNA helicase RuvA
L1_007_000M1_scaffold_278_14
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10571..11656
DNA (1086bp) protein (362aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
ruvB; Holliday junction ATP-dependent DNA helicase RuvB (EC:3.6.4.12)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Eubacterium sp. CAG:251 RepID=R6QBX6_9FIRM
L1_007_000M1_scaffold_278_15
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11671..13023
DNA (1353bp) protein (451aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
glmM; Phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Eubacterium sp. CAG:251 RepID=R6QK05_9FIRM
L1_007_000M1_scaffold_278_16
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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13037..13915
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BIE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD65565.1}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
Predicted SAM-dependent methyltransferases
L1_007_000M1_scaffold_278_17
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13931..14773
DNA (843bp) protein (281aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
ecfA1-2; Energy-coupling factor transporter ATP-binding protein EcfA 1 (EC:3.6.3.-)
ABC transporter related protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6RFS6_9FIRM
L1_007_000M1_scaffold_278_18
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14801..15679
DNA (879bp) protein (293aa)
ABC transporter related protein n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5X9Q8_9FIRM
ABC transporter related protein {ECO:0000313|EMBL:CDA12378.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
ABC transporter
L1_007_000M1_scaffold_278_19
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15672..16481
DNA (810bp) protein (270aa)
Cobalt transport protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6QBW9_9FIRM
Cobalt transport protein {ECO:0000313|EMBL:CDC33325.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L1_007_000M1_scaffold_278_20
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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16478..17239
DNA (762bp) protein (254aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BI95_9FIRM
L1_007_000M1_scaffold_278_21
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17229..18416
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5XU75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA12381.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
hypothetical protein
L1_007_000M1_scaffold_278_22
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18427..19131
DNA (705bp) protein (235aa)
Putative colicin V production protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KUE7_9CLOT
Putative colicin V production protein {ECO:0000313|EMBL:CCY68724.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
L1_007_000M1_scaffold_278_23
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19164..19823
DNA (660bp) protein (220aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5X9R6_9FIRM
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:CDA12383.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
phosphatidylglycerophosphate synthase
L1_007_000M1_scaffold_278_24
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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19843..22161
DNA (2319bp) protein (773aa)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BK88_9FIRM
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:CDD65548.1}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
ATPases with chaperone activity, ATP-binding subunit
L1_007_000M1_scaffold_278_25
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22819..23772)
DNA (954bp) protein (318aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L-lactate dehydrogenase (EC:1.1.1.27)
L-lactate dehydrogenase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z0F9_9CLOT
L1_007_000M1_scaffold_278_26
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23943..25214)
DNA (1272bp) protein (424aa)
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs n=1 Tax=Clostridium sp. CAG:678 RepID=R5L736_9CLOT
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs {ECO:0000313|EMBL:CCY68822.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
L1_007_000M1_scaffold_278_27
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25361..25972
DNA (612bp) protein (204aa)
Radical SAM domain protein n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BJK3_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:CDC33632.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
Radical SAM superfamily.
L1_007_000M1_scaffold_278_28
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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26148..27332
DNA (1185bp) protein (395aa)
Cysteine desulfurase NifS n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BHV7_9FIRM
Cysteine desulfurase NifS {ECO:0000313|EMBL:CDD65375.1}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
hypothetical protein
L1_007_000M1_scaffold_278_29
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27332..27748
DNA (417bp) protein (139aa)
Fe-S iron-sulfur cluster assembly protein NifU family n=1 Tax=Eubacterium sp. CAG:251 RepID=R6Q8S6_9FIRM
Fe-S iron-sulfur cluster assembly protein NifU family {ECO:0000313|EMBL:CDC32200.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
iscU; iron-sulfur cluster assembly protein IscU
L1_007_000M1_scaffold_278_30
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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27774..28688
DNA (915bp) protein (305aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
Quinolinate synthetase complex A subunit n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BIM4_9FIRM
quinolinate synthetase A
Displaying items 1-30 of 70 in total

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