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L1_007_000M1_scaffold_336

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_336_1
unknown

Not on your lists

3..431
-----------------
DNA (429bp)
protein (143aa)

This feature has no annotations

L1_007_000M1_scaffold_336_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(422..1792)
-----------------
DNA (1371bp)
protein (457aa)
DNA repair protein radA n=1 Tax=Roseburia sp. CAG:18 RepID=R5UI77_9FIRM
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA repair protein RadA
L1_007_000M1_scaffold_336_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1796..2209)
-----------------
DNA (414bp)
protein (138aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77734.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_336_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2254..4698)
-----------------
DNA (2445bp)
protein (815aa)
ATPase AAA-2 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHJ5_9FIRM
ATPase AAA-2 {ECO:0000313|EMBL:CCZ77733.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ATPase AAA-2
L1_007_000M1_scaffold_336_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4722..6365)
-----------------
DNA (1644bp)
protein (548aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAK4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77732.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_336_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6382..8133)
-----------------
DNA (1752bp)
protein (584aa)
Beta-N-acetylglucosaminidase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2W1_9FIRM
Beta-N-acetylglucosaminidase {ECO:0000313|EMBL:CCZ77731.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Beta-N-acetylglucosaminidase
L1_007_000M1_scaffold_336_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8224..9189)
-----------------
DNA (966bp)
protein (322aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UI73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77730.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glycosyltransferases involved in cell wall biogenesis
L1_007_000M1_scaffold_336_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9146..11716)
-----------------
DNA (2571bp)
protein (857aa)
Predicted membrane protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPL6_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CCZ77729.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted membrane protein
L1_007_000M1_scaffold_336_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11709..13553)
-----------------
DNA (1845bp)
protein (615aa)
Phosphoglycerol transferase and related proteins alkaline phosphatase superfamily n=2 Tax=root RepID=R5UHJ0_9FIRM
Phosphoglycerol transferase and related proteins alkaline phosphatase superfamily {ECO:0000313|EMBL:CCZ77728.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
sulfatase
L1_007_000M1_scaffold_336_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13642..13914)
-----------------
DNA (273bp)
protein (91aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77727.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_336_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13940..14155)
-----------------
DNA (216bp)
protein (72aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2V7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77726.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
XRE family transcriptional regulator protein
L1_007_000M1_scaffold_336_12
unknown

Not on your lists

14271..14540
-----------------
DNA (270bp)
protein (90aa)

This feature has no annotations

L1_007_000M1_scaffold_336_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14530..15798)
-----------------
DNA (1269bp)
protein (423aa)
Diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UI69_9FIRM
Diaminopimelate decarboxylase {ECO:0000313|EMBL:CCZ77725.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_336_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15948..16685
-----------------
DNA (738bp)
protein (246aa)
Soluble lytic murein transglycosylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPL1_9FIRM
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:CCZ77724.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
L1_007_000M1_scaffold_336_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16763..17668)
-----------------
DNA (906bp)
protein (302aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77723.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Ribosomal protein S1
L1_007_000M1_scaffold_336_16
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18051..18641)
-----------------
DNA (591bp)
protein (197aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YF66_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA26123.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Predicted phosphoesterases, related to the Icc protein
L1_007_000M1_scaffold_336_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18641..20557)
-----------------
DNA (1917bp)
protein (639aa)
Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2V1_9FIRM
Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein {ECO:0000313|EMBL:CCZ77721.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
L1_007_000M1_scaffold_336_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20720..21301
-----------------
DNA (582bp)
protein (194aa)
Chemotaxis protein CheC inhibitor of MCP methylation n=1 Tax=Roseburia sp. CAG:18 RepID=R5UI63_9FIRM
Chemotaxis protein CheC inhibitor of MCP methylation {ECO:0000313|EMBL:CCZ77720.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Chemotaxis protein CheC, inhibitor of MCP methylation
L1_007_000M1_scaffold_336_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21302..21661
-----------------
DNA (360bp)
protein (120aa)
Two-component response regulator involved in modulation of flagellar n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPK7_9FIRM
Two-component response regulator involved in modulation of flagellar {ECO:0000313|EMBL:CCZ77719.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
L1_007_000M1_scaffold_336_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21693..21827
-----------------
DNA (135bp)
protein (45aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ77718.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_336_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21763..22416)
-----------------
DNA (654bp)
protein (218aa)
Negative regulator of genetic competence sporulation and motility n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAJ1_9FIRM
Negative regulator of genetic competence sporulation and motility {ECO:0000313|EMBL:CCZ77717.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Negative regulator of genetic competence, sporulation and motility
L1_007_000M1_scaffold_336_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22421..23008)
-----------------
DNA (588bp)
protein (196aa)
RNA polymerase factor sigma-70 (EC:2.7.7.6)
RNA polymerase factor sigma-70 n=2 Tax=root RepID=R5V2U7_9FIRM
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:CCZ77716.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_336_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23016..23786)
-----------------
DNA (771bp)
protein (257aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
Putative tRNA/rRNA methyltransferase n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZBD3_9FIRM
Putative tRNA/rRNA methyltransferase {ECO:0000313|EMBL:CCZ77715.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_336_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23798..24232)
-----------------
DNA (435bp)
protein (145aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Mini-ribonuclease 3 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPK5_9FIRM
putative ribonuclease III
L1_007_000M1_scaffold_336_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24229..25659)
-----------------
DNA (1431bp)
protein (477aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHH6_9FIRM
L1_007_000M1_scaffold_336_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25735..26262)
-----------------
DNA (528bp)
protein (176aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VAI7_9FIRM
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
L1_007_000M1_scaffold_336_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26469..27452)
-----------------
DNA (984bp)
protein (328aa)
Phosphate acetyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V2U1_9FIRM
Phosphate acetyltransferase {ECO:0000313|EMBL:CCZ77711.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
phosphate acetyltransferase
L1_007_000M1_scaffold_336_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27647..28954)
-----------------
DNA (1308bp)
protein (436aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine sulfhydrolase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UI54_9FIRM
O-acetylhomoserine sulfhydrolase {ECO:0000313|EMBL:CCZ77710.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_336_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29832..30887)
-----------------
DNA (1056bp)
protein (352aa)
Guanylate kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UPK0_9FIRM
Guanylate kinase {ECO:0000313|EMBL:CCZ77709.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Guanylate kinase
L1_007_000M1_scaffold_336_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30926..31384)
-----------------
DNA (459bp)
protein (153aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHH2_9FIRM
FKBP-type peptidyl-prolyl cis-trans isomerases 2
Displaying items 1-30 of 50 in total

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