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L1_007_000M1_scaffold_396

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_396_1
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

769..1278
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP16_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79830.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_396_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1388..2005
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79829.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_396_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2110..3075
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79828.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_396_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3120..3602)
DNA (483bp) protein (161aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGE5_9FIRM
hypothetical protein
L1_007_000M1_scaffold_396_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3710..4318
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8P6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79826.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_396_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4284..4529
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP13_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79825.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_396_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4544..5110
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVS1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79824.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_396_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5270..7348
DNA (2079bp) protein (693aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79823.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_396_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7361..9520
DNA (2160bp) protein (720aa)
X-X-X-Leu-X-X-Gly heptad repeats n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGE0_9FIRM
X-X-X-Leu-X-X-Gly heptad repeats {ECO:0000313|EMBL:CCZ79822.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
X-X-X-Leu-X-X-Gly heptad repeats
L1_007_000M1_scaffold_396_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9544..10119
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8P0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79821.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_396_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10103..10912
DNA (810bp) protein (270aa)
exonuclease, DNA polymerase III, epsilon subunit family (EC:2.7.7.7)
Exonuclease DNA polymerase III epsilon subunit family n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP10_9FIRM
Exonuclease DNA polymerase III epsilon subunit family {ECO:0000313|EMBL:CCZ79820.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_396_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10893..11480)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79819.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_396_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11547..11660
DNA (114bp) protein (38aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNF6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79818.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_396_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11730..13406
DNA (1677bp) protein (559aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79817.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_396_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13418..14395
DNA (978bp) protein (326aa)
Hydrogenase expression/formation protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8N5_9FIRM
Hydrogenase expression/formation protein {ECO:0000313|EMBL:CCZ79816.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hydrogenase expression/formation protein
L1_007_000M1_scaffold_396_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14410..14889
DNA (480bp) protein (160aa)
Transcriptional regulatory protein AsnC family (AsnC) n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP05_9FIRM
Transcriptional regulatory protein AsnC family (AsnC) {ECO:0000313|EMBL:CCZ79815.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
AsnC family transcriptional regulator
L1_007_000M1_scaffold_396_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14889..16061
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79814.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Aspartate/tyrosine/aromatic aminotransferase
L1_007_000M1_scaffold_396_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16064..16567
DNA (504bp) protein (168aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted rRNA methylase (SpoU class) (EC:2.1.1.-)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNF0_9FIRM
L1_007_000M1_scaffold_396_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16569..17426
DNA (858bp) protein (286aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC transporter ATP-binding protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGC9_9FIRM
ABC transporter ATP-binding protein
L1_007_000M1_scaffold_396_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17460..18323
DNA (864bp) protein (288aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC-type cobalt transport system ATPase component n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8N1_9FIRM
ABC-type cobalt transport system, ATPase component
L1_007_000M1_scaffold_396_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18349..19164
DNA (816bp) protein (272aa)
Energy-coupling factor transporter transmembrane protein EcfT n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP01_9FIRM
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
cobalt transport protein
L1_007_000M1_scaffold_396_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19239..19973
DNA (735bp) protein (245aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVQ6_9FIRM
L1_007_000M1_scaffold_396_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20296..20724
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNE5_9FIRM
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
rplM; 50S ribosomal protein L13
L1_007_000M1_scaffold_396_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20744..21136
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGC5_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
rpsI; 30S ribosomal protein S9
L1_007_000M1_scaffold_396_25
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21343..21681)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJA1_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:CDB14014.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
L1_007_000M1_scaffold_396_26

Not on your lists

comp(21695..22786)
DNA (1092bp) protein (364aa)
Putative uncharacterized protein n=1 Tax=unidentified phage RepID=H7BVE3_9VIRU
Putative uncharacterized protein {ECO:0000313|EMBL:AFB75788.1}; TaxID=38018 species="Viruses; unclassified phages.;" source="unidentified phage.;"
integrase family protein
L1_007_000M1_scaffold_396_27
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22876..23445)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDC6_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS07355.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
L1_007_000M1_scaffold_396_28
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23516..23713
DNA (198bp) protein (66aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJA4_CLOSY
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDS07356.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
DNA-binding protein
L1_007_000M1_scaffold_396_29
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23971..24351)
DNA (381bp) protein (127aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SJA5_CLOSY
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDS07358.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L1_007_000M1_scaffold_396_30
unknown

Not on your lists

24499..24693
DNA (195bp) protein (65aa)

This feature has no annotations

Displaying items 1-30 of 99 in total

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