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L1_007_000M1_scaffold_428

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Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_428_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..609)
DNA (609bp) protein (203aa)
Restriction-modification system specificity subunit n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MV69_BIFL1
restriction-modification system specificity subunit
Restriction-modification system specificity subunit {ECO:0000313|EMBL:BAJ71663.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_007_000M1_scaffold_428_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(609..3176)
DNA (2568bp) protein (856aa)
Type I restriction-modification system, M subunit n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B135_BIFLN
Type I restriction-modification protein subunit M {ECO:0000313|EMBL:KEY33544.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
DNA methylase
L1_007_000M1_scaffold_428_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3208..4143)
DNA (936bp) protein (312aa)
Restriction endonuclease family protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I3D1_BIFLN
Restriction endonuclease family protein {ECO:0000313|EMBL:CCK35438.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
mrr; restriction endonuclease
L1_007_000M1_scaffold_428_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4177..4782
DNA (606bp) protein (202aa)
Type I restriction modification DNA specificity domain protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B108_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:KEY33542.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Sau1hsdS1
L1_007_000M1_scaffold_428_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4797..6344
DNA (1548bp) protein (516aa)
Putative transcriptional regulator n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MV68_BIFL1
Putative transcriptional regulator {ECO:0000313|EMBL:BAJ71662.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
transcriptional regulator
L1_007_000M1_scaffold_428_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6341..9628
DNA (3288bp) protein (1096aa)
Type I site-specific restriction-modification system R subunit n=4 Tax=Bifidobacterium RepID=B3DRM5_BIFLD
Type I site-specific restriction-modification system R subunit {ECO:0000313|EMBL:ACD99407.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
deoxyribonuclease
L1_007_000M1_scaffold_428_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9696..10916)
DNA (1221bp) protein (407aa)
S-adenosylmethionine synthase {ECO:0000255|HAMAP-Rule:MF_00086}; Short=AdoMet synthase {ECO:0000255|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000255|HAMAP-Rule:MF_00086};; MAT {ECO:0000255|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000255|HAMAP-Rule:MF_00086}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
S-adenosylmethionine synthase n=2 Tax=Bifidobacterium longum RepID=METK_BIFLD
metK; S-adenosylmethionine synthetase
L1_007_000M1_scaffold_428_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11194..11478)
DNA (285bp) protein (95aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
DNA-directed RNA polymerase subunit omega n=17 Tax=Bifidobacterium RepID=RPOZ_BIFLD
DNA-directed RNA polymerase omega subunit
L1_007_000M1_scaffold_428_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11773..13542
DNA (1770bp) protein (590aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Dihydroxy-acid dehydratase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZVP2_BIFLJ
dihydroxy-acid dehydratase
L1_007_000M1_scaffold_428_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13634..14620)
DNA (987bp) protein (329aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
Methionyl-tRNA formyltransferase n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I2P5_BIFLN
methionyl-tRNA formyltransferase
L1_007_000M1_scaffold_428_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14644..15348)
DNA (705bp) protein (235aa)
Haloacid dehalogenase-like hydrolase (HAD superfamily) n=2 Tax=Bifidobacterium longum RepID=V6XXJ4_BIFLN
HAD family hydrolase {ECO:0000313|EMBL:KEY21631.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
HAD family hydrolase
L1_007_000M1_scaffold_428_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15407..17719)
DNA (2313bp) protein (771aa)
Primosome assembly protein PriA n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MXV5_9BIFI
Primosome assembly protein PriA {ECO:0000313|EMBL:KEY33553.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
primosome assembly protein PriA
L1_007_000M1_scaffold_428_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17759..18481)
DNA (723bp) protein (241aa)
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:CCK35427.1}; EC=3.1.3.3 {ECO:0000313|EMBL:CCK35427.1};; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
Phosphoserine phosphatase SerB n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I2F2_BIFLN
phosphoserine phosphatase
L1_007_000M1_scaffold_428_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18532..19230
DNA (699bp) protein (233aa)
DedA family protein n=11 Tax=Bifidobacterium RepID=V6XXP2_BIFLN
membrane protein
Hypothetical membrane protein {ECO:0000313|EMBL:ACD99415.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_000M1_scaffold_428_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19291..20856
DNA (1566bp) protein (522aa)
AAA ATPase forming ring-shaped complexes n=1 Tax=Bifidobacterium longum subsp. longum 44B RepID=I3BHY8_BIFLN
rpt1; ATPase
AAA ATPase forming ring-shaped complexes {ECO:0000256|SAAS:SAAS00017598}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L1_007_000M1_scaffold_428_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20878..22545
DNA (1668bp) protein (556aa)
Proteasome accessory factor PafA2 n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B2Z7_BIFLN
Ligase {ECO:0000313|EMBL:AIW44112.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
ligase
L1_007_000M1_scaffold_428_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22557..23453
DNA (897bp) protein (299aa)
Possible inositol monophosphatase n=15 Tax=Bifidobacterium RepID=Q8G3G4_BIFLO
inositol monophosphatase
Putative inositol monophosphatase {ECO:0000313|EMBL:BAJ71650.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_007_000M1_scaffold_428_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23520..23747
DNA (228bp) protein (76aa)
Prokaryotic ubiquitin-like protein Pup n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EDN3_BIFLI
Ubiquitin-like protein Pup {ECO:0000313|EMBL:EEQ56127.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L1_007_000M1_scaffold_428_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23747..25207
DNA (1461bp) protein (487aa)
Pup--protein ligase {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320}; EC=6.3.2.n2 {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320};; Proteasome accessory factor A {ECO:0000256|HAMAP-Rule:MF_02111}; Pup-conjugating enzyme {ECO:0000256|HAMAP-Rule:MF_02111}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Pup--protein ligase n=1 Tax=Bifidobacterium longum subsp. longum 1-6B RepID=I3B2W6_BIFLN
hypothetical protein
L1_007_000M1_scaffold_428_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25323..25604)
DNA (282bp) protein (94aa)
DNA-binding protein HB1 n=20 Tax=Bifidobacterium RepID=DBH1_BIFLO
hup; DNA-binding protein HU
DNA-binding protein HB1 {ECO:0000313|EMBL:EIJ30978.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L1_007_000M1_scaffold_428_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25750..28311)
DNA (2562bp) protein (854aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EDN6_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:EEQ56130.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L1_007_000M1_scaffold_428_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28425..29861)
DNA (1437bp) protein (479aa)
Adenylosuccinate lyase n=3 Tax=Bifidobacterium longum RepID=E8MEK2_BIFL2
adenylosuccinate lyase
Adenylosuccinate lyase {ECO:0000313|EMBL:BAJ67129.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L1_007_000M1_scaffold_428_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29994..30635
DNA (642bp) protein (214aa)
Predicted membrane protein n=14 Tax=Bifidobacterium RepID=D6DBI9_BIFLN
hypothetical protein
Cobalt ABC transporter, permease protein {ECO:0000313|EMBL:EIJ25121.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L1_007_000M1_scaffold_428_24
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30823..30936)
DNA (114bp) protein (38aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MX19_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY96315.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L1_007_000M1_scaffold_428_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31402..33006)
DNA (1605bp) protein (535aa)
Uncharacterized protein n=7 Tax=Bifidobacterium longum RepID=Q8G3F7_BIFLO
PGAP1-like domain protein {ECO:0000313|EMBL:EIJ30974.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
hypothetical protein
L1_007_000M1_scaffold_428_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33003..33350)
DNA (348bp) protein (116aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=Q8G3F6_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN25588.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L1_007_000M1_scaffold_428_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33593..34222)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EDP3_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:EEQ56137.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L1_007_000M1_scaffold_428_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34192..35223)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5N312_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW44102.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_000M1_scaffold_428_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35220..36278)
DNA (1059bp) protein (353aa)
Von Willebrand factor type A-like protein n=10 Tax=Bifidobacterium RepID=B3DRP9_BIFLD
hypothetical protein
von Willebrand factor A {ECO:0000313|EMBL:KEY21649.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L1_007_000M1_scaffold_428_30
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36275..36829)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I402_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY96321.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Displaying items 1-30 of 65 in total

View Taxonomy