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L1_007_000M1_scaffold_467

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_467_1
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(124..774)
DNA (651bp) protein (217aa)
Flagellin and related hook-associated proteins n=2 Tax=Eubacterium rectale RepID=D4JIJ9_9FIRM
Flagellin and related hook-associated proteins
Flagellin and related hook-associated proteins {ECO:0000313|EMBL:CBK89689.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_007_000M1_scaffold_467_2
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1096..1524
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HWP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29182.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
XRE family transcriptional regulator
L1_007_000M1_scaffold_467_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1616..1807)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78485.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_467_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1905..2627)
DNA (723bp) protein (241aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
NAD-dependent protein deacetylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4W7_9FIRM
L1_007_000M1_scaffold_467_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2755..3810)
DNA (1056bp) protein (352aa)
Putative methyl-accepting chemotaxis protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VCJ0_9FIRM
Putative methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CCZ78487.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative methyl-accepting chemotaxis protein
L1_007_000M1_scaffold_467_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3982..4506)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78488.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
spore maturation protein B
L1_007_000M1_scaffold_467_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4503..5087)
DNA (585bp) protein (195aa)
Uncharacterized membrane protein required for spore maturation in B.subtilis n=1 Tax=Roseburia sp. CAG:18 RepID=R5URX8_9FIRM
Uncharacterized membrane protein required for spore maturation in B.subtilis {ECO:0000313|EMBL:CCZ78489.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Uncharacterized membrane protein, required for spore maturation in B.subtilis.
L1_007_000M1_scaffold_467_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5238..6983
DNA (1746bp) protein (582aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78490.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_467_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7000..7854)
DNA (855bp) protein (285aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4X2_9FIRM
conserved hypothetical protein TIGR00096
L1_007_000M1_scaffold_467_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8102..9454
DNA (1353bp) protein (451aa)
Putative efflux protein MATE family n=1 Tax=Roseburia sp. CAG:18 RepID=R5VCJ7_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CCZ78492.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative efflux protein, MATE family
L1_007_000M1_scaffold_467_11
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(9433..10236)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GSB8_SELRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL83655.1}; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
L1_007_000M1_scaffold_467_12
unknown

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comp(10269..11051)
DNA (783bp) protein (261aa)

This feature has no annotations

L1_007_000M1_scaffold_467_13
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11032..11748)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IXP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS26674.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
L1_007_000M1_scaffold_467_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11968..12330)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78493.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_467_15
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12314..12571)
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WX83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX77837.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L1_007_000M1_scaffold_467_16
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12621..14084)
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9MYI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS75858.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
membrane associated histidine kinase-like ATPase
L1_007_000M1_scaffold_467_17
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

comp(14091..14819)
DNA (729bp) protein (243aa)
Uncharacterized protein n=2 Tax=root RepID=R6ESY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB00264.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
transcriptional regulator
L1_007_000M1_scaffold_467_18
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14837..15772)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YGS2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA26080.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_007_000M1_scaffold_467_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16142..18769)
DNA (2628bp) protein (876aa)
Excinuclease ATPase subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5URY5_9FIRM
Excinuclease ATPase subunit {ECO:0000313|EMBL:CCZ78494.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Excinuclease ATPase subunit
L1_007_000M1_scaffold_467_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18831..20450)
DNA (1620bp) protein (540aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKF7_9FIRM
L1_007_000M1_scaffold_467_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20508..20765)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4Z7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78496.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Phosphotransferase System HPr (HPr) Family
L1_007_000M1_scaffold_467_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20849..22882)
DNA (2034bp) protein (678aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VCM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78497.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4)
L1_007_000M1_scaffold_467_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22895..23809)
DNA (915bp) protein (305aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJS5_9FIRM
L1_007_000M1_scaffold_467_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23806..24555)
DNA (750bp) protein (250aa)
Transcriptional regulators of sugar metabolism n=1 Tax=Roseburia sp. CAG:18 RepID=R5US09_9FIRM
Transcriptional regulators of sugar metabolism {ECO:0000313|EMBL:CCZ78499.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Transcriptional regulators of sugar metabolism
L1_007_000M1_scaffold_467_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25206..26729
DNA (1524bp) protein (508aa)
Fe-hydrogenase large subunit family protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKI8_9FIRM
Fe-hydrogenase large subunit family protein {ECO:0000313|EMBL:CCZ78500.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Iron only hydrogenase large subunit, C-terminal domain
L1_007_000M1_scaffold_467_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26799..27557)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V509_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78501.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_467_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27681..29696)
DNA (2016bp) protein (672aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VCN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78502.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats
L1_007_000M1_scaffold_467_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29701..30222)
DNA (522bp) protein (174aa)
Sigma-24 ECF subfamily n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJS9_9FIRM
Sigma-24 ECF subfamily {ECO:0000313|EMBL:CCZ78503.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
RNA polymerase sigma factor, sigma-70 family
L1_007_000M1_scaffold_467_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30324..31139)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8F3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79721.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_467_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31141..33114)
DNA (1974bp) protein (658aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNT3_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:CCZ79720.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
diguanylate cyclase (GGDEF) domain
Displaying items 1-30 of 47 in total

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