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L1_007_000M1_scaffold_468

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_468_1
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..1022)
-----------------
DNA (1020bp)
protein (340aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Coprococcus catus GD/7 RepID=D4J604_9FIRM
ABC-type multidrug transport system, ATPase and permease components
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBK79775.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L1_007_000M1_scaffold_468_2
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1022..2761)
-----------------
DNA (1740bp)
protein (580aa)
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZB2_9FIRM
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components {ECO:0000313|EMBL:CBL27122.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_468_3
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2788..3138)
-----------------
DNA (351bp)
protein (117aa)
Nitrous oxide-stimulated promoter n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZB1_9FIRM
Nitrous oxide-stimulated promoter.
Nitrous oxide-stimulated promoter {ECO:0000313|EMBL:CBL27121.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_468_4
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3119..3550)
-----------------
DNA (432bp)
protein (144aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZB0_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL27120.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_468_5
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3602..3739)
-----------------
DNA (138bp)
protein (46aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZA9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL27119.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_468_6
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3949..4767)
-----------------
DNA (819bp)
protein (273aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZA8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL27118.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_468_7
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4780..5667)
-----------------
DNA (888bp)
protein (296aa)
Mn-dependent transcriptional regulator n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZA7_9FIRM
Mn-dependent transcriptional regulator
Mn-dependent transcriptional regulator {ECO:0000313|EMBL:CBL27117.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_468_8
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5631..6395)
-----------------
DNA (765bp)
protein (255aa)
Transcriptional regulators of sugar metabolism n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PWS6_9FIRM
Transcriptional regulators of sugar metabolism {ECO:0000313|EMBL:CDC14202.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Transcriptional regulators of sugar metabolism
L1_007_000M1_scaffold_468_9
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6545..8455)
-----------------
DNA (1911bp)
protein (637aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NPR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14203.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4)
L1_007_000M1_scaffold_468_10
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8457..9374)
-----------------
DNA (918bp)
protein (306aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P0J4_9FIRM
L1_007_000M1_scaffold_468_11
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9689..10846)
-----------------
DNA (1158bp)
protein (386aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSL6_9FIRM
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:CDC14205.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_468_12
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10906..12720)
-----------------
DNA (1815bp)
protein (605aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Elongation factor 4 n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P6R4_9FIRM
GTP-binding protein LepA
L1_007_000M1_scaffold_468_13
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12737..13774)
-----------------
DNA (1038bp)
protein (346aa)
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III, delta subunit n=2 Tax=Clostridiales RepID=D4LZA2_9FIRM
DNA polymerase III delta subunit {ECO:0000313|EMBL:CDC14207.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_468_14
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13786..16083)
-----------------
DNA (2298bp)
protein (766aa)
DNA internalization-related competence protein ComEC/Rec2 n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZA1_9FIRM
DNA internalization-related competence protein ComEC/Rec2 {ECO:0000313|EMBL:CBL27111.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
DNA internalization-related competence protein ComEC/Rec2
L1_007_000M1_scaffold_468_15
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16080..17012)
-----------------
DNA (933bp)
protein (311aa)
Spore germination protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P0J6_9FIRM
Spore germination protein {ECO:0000313|EMBL:CDC14209.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Spore germination protein
L1_007_000M1_scaffold_468_16
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17023..18396)
-----------------
DNA (1374bp)
protein (458aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Signal transduction histidine kinase (EC:2.7.13.3)
Signal transduction histidine kinase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSM0_9FIRM
L1_007_000M1_scaffold_468_17
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18455..19144)
-----------------
DNA (690bp)
protein (230aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=root RepID=D4LZ98_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL27108.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_468_18
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19181..19882)
-----------------
DNA (702bp)
protein (234aa)
Competence protein ComEA helix-hairpin-helix repeat region n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PWT1_9FIRM
Competence protein ComEA helix-hairpin-helix repeat region {ECO:0000313|EMBL:CDC14212.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
competence protein ComEA helix-hairpin-helix repeat region
L1_007_000M1_scaffold_468_19
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20024..20455)
-----------------
DNA (432bp)
protein (144aa)
Uncharacterized protein conserved in bacteria n=2 Tax=Clostridiales RepID=D4LZ96_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDC14213.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_468_20
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20519..21700)
-----------------
DNA (1182bp)
protein (394aa)
acetylornithine and succinylornithine aminotransferases (EC:2.6.1.11)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107, ECO:0000313|EMBL:CBL27105.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Acetylornithine aminotransferase n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ95_9FIRM
L1_007_000M1_scaffold_468_21
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21687..22589)
-----------------
DNA (903bp)
protein (301aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSM4_9FIRM
L1_007_000M1_scaffold_468_22
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22652..23875)
-----------------
DNA (1224bp)
protein (408aa)
glutamate N-acetyltransferase/amino-acid acetyltransferase (EC:2.3.1.35 2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ n=2 Tax=Clostridiales RepID=D4LZ93_9FIRM
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_468_23
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23892..24338)
-----------------
DNA (447bp)
protein (149aa)
N-acetylglutamate synthase (EC:2.3.1.1)
N-acetylglutamate synthase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PWT4_9FIRM
N-acetylglutamate synthase {ECO:0000313|EMBL:CDC14217.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_468_24
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24363..25403)
-----------------
DNA (1041bp)
protein (347aa)
N-acetyl-gamma-glutamyl-phosphate reductase, common form (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ91_9FIRM
L1_007_000M1_scaffold_468_25
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25958..27187
-----------------
DNA (1230bp)
protein (410aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Argininosuccinate synthase n=2 Tax=Clostridiales RepID=D4LZ90_9FIRM
L1_007_000M1_scaffold_468_26
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27369..28733)
-----------------
DNA (1365bp)
protein (455aa)
Predicted Fe-S oxidoreductases n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NSM9_9FIRM
Predicted Fe-S oxidoreductases {ECO:0000313|EMBL:CDC14220.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted Fe-S oxidoreductases
L1_007_000M1_scaffold_468_27
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29038..29610
-----------------
DNA (573bp)
protein (191aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P6S9_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDC14221.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Transcriptional regulator
L1_007_000M1_scaffold_468_28
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29648..30058)
-----------------
DNA (411bp)
protein (137aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ87_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL27097.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_468_29
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30087..30275)
-----------------
DNA (189bp)
protein (63aa)
Toxin-antitoxin system toxin component HicA family n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NPT6_9FIRM
Toxin-antitoxin system toxin component HicA family {ECO:0000313|EMBL:CDC14223.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
phage protein
L1_007_000M1_scaffold_468_30
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30485..32917)
-----------------
DNA (2433bp)
protein (811aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049, ECO:0000313|EMBL:CBL27096.1};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=2 Tax=Clostridiales RepID=D4LZ86_9FIRM
Displaying items 1-30 of 64 in total

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