ggKbase home page

L1_007_000M1_scaffold_493

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_493_1
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

392..1318
DNA (927bp) protein (309aa)
Dockerin type I repeat n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DN24_9FIRM
Dockerin type I repeat {ECO:0000313|EMBL:CCX81650.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Dockerin type I repeat.
L1_007_000M1_scaffold_493_2
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1428..1775)
DNA (348bp) protein (116aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNV8_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCX81893.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Helix-turn-helix.
L1_007_000M1_scaffold_493_3
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2045..2992
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:156 RepID=R5YZ30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA29774.1}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
L1_007_000M1_scaffold_493_4

Not on your lists

3062..3844
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C373EA
Uncharacterized protein {ECO:0000313|EMBL:KKM76060.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
L1_007_000M1_scaffold_493_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3949..4176)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYI0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81652.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_493_6
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4279..5007)
DNA (729bp) protein (243aa)
Haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0B5_9FIRM
Haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CCX81656.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
L1_007_000M1_scaffold_493_7
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5158..5784
DNA (627bp) protein (209aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
endonuclease III (EC:4.2.99.18)
Endonuclease III n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DN84_9FIRM
L1_007_000M1_scaffold_493_8
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5798..6631
DNA (834bp) protein (278aa)
HAD-superfamily hydrolase, subfamily IIB n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5M4_9FIRM
HAD-superfamily hydrolase, subfamily IIB
HAD-superfamily hydrolase, subfamily IIB {ECO:0000313|EMBL:CBL14919.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_493_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6730..7143)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0B9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81661.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_493_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7130..8941)
DNA (1812bp) protein (604aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Elongation factor 4 n=2 Tax=Clostridiales RepID=R5DN88_9FIRM
GTP-binding protein LepA
L1_007_000M1_scaffold_493_11
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9473..9928
DNA (456bp) protein (152aa)
C_GCAxxG_C_C family protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E2A1_9FIRM
C_GCAxxG_C_C family protein {ECO:0000313|EMBL:CCX82932.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_493_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10063..12423
DNA (2361bp) protein (787aa)
asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthase (Glutamine-hydrolyzing) n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E438_9FIRM
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:CCX82931.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_493_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12633..13526)
DNA (894bp) protein (298aa)
Zinc carboxypeptidase n=2 Tax=root RepID=R5E294_9FIRM
Zinc carboxypeptidase {ECO:0000313|EMBL:CCX82927.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Zinc carboxypeptidase.
L1_007_000M1_scaffold_493_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13577..14122
DNA (546bp) protein (182aa)
ADP-ribose pyrophosphatase (EC:3.6.1.13)
ADP-ribose pyrophosphatase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E434_9FIRM
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:CCX82926.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_493_15
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14143..15075
DNA (933bp) protein (311aa)
riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2 2.7.1.26)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491, ECO:0000313|EMBL:CBL14915.1};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491, ECO:0000313|EMBL:CBL14915.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5M0_9FIRM
L1_007_000M1_scaffold_493_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15442..16257)
DNA (816bp) protein (272aa)
Nucleotidyltransferase domain n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVH6_9FIRM
Nucleotidyltransferase domain {ECO:0000313|EMBL:CCX82924.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Nucleotidyltransferase domain.
L1_007_000M1_scaffold_493_17
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16303..17712)
DNA (1410bp) protein (470aa)
Putative efflux protein, MATE family n=2 Tax=Ruminococcus RepID=D4L5K4_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL14899.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_493_18
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17961..18554
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5K3_9FIRM
conserved hypothetical protein, DprA/Smf-related, family 2
Uncharacterized protein {ECO:0000313|EMBL:CBL14898.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_493_19
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18547..18720
DNA (174bp) protein (58aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DRV0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14897.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_493_20
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19097..19915
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E282_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82917.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_493_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20067..20873
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E426_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82916.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein predicted by Glimmer/Critica
L1_007_000M1_scaffold_493_22
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20988..21815
DNA (828bp) protein (276aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5K1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14896.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_493_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21879..22622
DNA (744bp) protein (248aa)
signal peptidase I, archaeal type (EC:3.4.21.89)
Signal peptidase I archaeal type n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQW8_9FIRM
Signal peptidase I archaeal type {ECO:0000313|EMBL:CCX82558.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_493_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22846..24381
DNA (1536bp) protein (512aa)
Uncharacterized protein n=2 Tax=root RepID=R5E1A1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82557.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_493_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24475..27021
DNA (2547bp) protein (849aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E335_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82556.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_493_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27031..28035
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUL3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82554.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_493_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28064..30001
DNA (1938bp) protein (646aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82553.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_493_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30030..33257
DNA (3228bp) protein (1076aa)
Listeria/Bacterioides repeat n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E333_9FIRM
Listeria/Bacterioides repeat {ECO:0000313|EMBL:CCX82551.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Listeria/Bacterioides repeat
L1_007_000M1_scaffold_493_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33279..34430
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82549.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_493_30
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34921..35664
DNA (744bp) protein (248aa)
signal peptidase I, archaeal type (EC:3.4.21.89)
Signal peptidase I archaeal type n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E328_9FIRM
Signal peptidase I archaeal type {ECO:0000313|EMBL:CCX82546.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Displaying items 1-30 of 38 in total

View Taxonomy