ggKbase home page

L1_007_000M1_scaffold_609

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_609_1
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

164..1390
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5YF97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA15227.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
L1_007_000M1_scaffold_609_2
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

1426..2532
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XI83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA15228.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
hypothetical protein
L1_007_000M1_scaffold_609_3
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2625..3122)
DNA (498bp) protein (166aa)
Predicted membrane protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M425_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBL25987.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_609_4
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3676..4434
DNA (759bp) protein (253aa)
Glycopeptide antibiotics resistance protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M426_9FIRM
Glycopeptide antibiotics resistance protein
Glycopeptide antibiotics resistance protein {ECO:0000313|EMBL:CBL25988.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_609_5
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4473..5369
DNA (897bp) protein (299aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PD93_9FIRM
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CDC16496.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_609_6
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5421..6695)
DNA (1275bp) protein (425aa)
Aspartyl aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387, ECO:0000313|EMBL:CBL25992.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
M18 family aminopeptidase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M430_9FIRM
L1_007_000M1_scaffold_609_7
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6896..8470
DNA (1575bp) protein (525aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Signal transduction histidine kinase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NWM4_9FIRM
Signal transduction histidine kinase
L1_007_000M1_scaffold_609_8
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8488..10236
DNA (1749bp) protein (583aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
adenine deaminase (EC:3.5.4.2)
Adenine deaminase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P7A9_9FIRM
L1_007_000M1_scaffold_609_9
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10513..11355)
DNA (843bp) protein (281aa)
Formate/nitrite family of transporters n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NZB2_9FIRM
Formate/nitrite family of transporters {ECO:0000313|EMBL:CDC16500.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Formate/nitrite family of transporters
L1_007_000M1_scaffold_609_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11837..12148
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32554.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L1_007_000M1_scaffold_609_11
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12087..12233
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PDA4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC16501.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_609_12
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12379..13770
DNA (1392bp) protein (464aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q3L7_9FIRM
L1_007_000M1_scaffold_609_13
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14124..15842
DNA (1719bp) protein (573aa)
Na/Pi-cotransporter n=1 Tax=Ruminococcus torques L2-14 RepID=D4M058_9FIRM
Na/Pi-cotransporter
Na/Pi-cotransporter {ECO:0000313|EMBL:CBL27418.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_609_14
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16163..17503
DNA (1341bp) protein (447aa)
uncharacterized domain HDIG (EC:2.7.7.72 3.1.4.- 3.1.3.-)
Uncharacterized domain HDIG {ECO:0000313|EMBL:CBL27419.1}; EC=2.7.7.21 {ECO:0000313|EMBL:CBL27419.1};; EC=2.7.7.25 {ECO:0000313|EMBL:CBL27419.1};; EC=3.1.3.- {ECO:0000313|EMBL:CBL27419.1};; EC=3.1.4.- {ECO:0000313|EMBL:CBL27419.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Uncharacterized domain HDIG n=1 Tax=Ruminococcus torques L2-14 RepID=D4M059_9FIRM
L1_007_000M1_scaffold_609_15
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17650..18735
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NZC6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC16505.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_609_16
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18905..19177
DNA (273bp) protein (91aa)
Bacterial nucleoid DNA-binding protein n=2 Tax=Clostridiales RepID=D4M061_9FIRM
Bacterial nucleoid DNA-binding protein
Bacterial nucleoid DNA-binding protein {ECO:0000313|EMBL:CDC16506.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_609_17
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19203..19442
DNA (240bp) protein (80aa)
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NZC9_9FIRM
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) {ECO:0000313|EMBL:CDC16510.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
L1_007_000M1_scaffold_609_18
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19720..20007
DNA (288bp) protein (96aa)
Sporulation protein YabP n=2 Tax=Clostridiales RepID=D4M063_9FIRM
sporulation protein YabP
Sporulation protein YabP {ECO:0000313|EMBL:CBL27423.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_609_19
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20020..20349
DNA (330bp) protein (110aa)
Spore cortex protein YabQ (Spore_YabQ) n=1 Tax=Ruminococcus torques L2-14 RepID=D4M064_9FIRM
Spore cortex protein YabQ (Spore_YabQ).
Spore cortex protein YabQ (Spore_YabQ) {ECO:0000313|EMBL:CBL27424.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_609_20
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20450..20782
DNA (333bp) protein (111aa)
Septum formation initiator n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q3M8_9FIRM
Septum formation initiator {ECO:0000313|EMBL:CDC16517.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Septum formation initiator.
L1_007_000M1_scaffold_609_21
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20992..22395
DNA (1404bp) protein (468aa)
Stage II sporulation protein E (SpoIIE). (EC:3.1.3.16)
Stage II sporulation protein E (SpoIIE) n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P7C9_9FIRM
Stage II sporulation protein E (SpoIIE) {ECO:0000313|EMBL:CDC16519.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_609_22
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22438..23883
DNA (1446bp) protein (482aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain (EC:6.3.4.-)
tRNA(Ile)-lysidine synthase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NZD7_9FIRM
L1_007_000M1_scaffold_609_23
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23888..24415
DNA (528bp) protein (176aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:CBL27428.1}; EC=2.4.2.8 {ECO:0000313|EMBL:CBL27428.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Hypoxanthine phosphoribosyltransferase n=2 Tax=Clostridiales RepID=D4M068_9FIRM
L1_007_000M1_scaffold_609_24
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24434..26272
DNA (1839bp) protein (613aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q3N1_9FIRM
ATP-dependent metalloprotease FtsH
L1_007_000M1_scaffold_609_25
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26394..28451
DNA (2058bp) protein (686aa)
Glycosidases (EC:3.2.1.20)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NWQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC16523.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_609_26
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28558..29421)
DNA (864bp) protein (288aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P7D3_9FIRM
L1_007_000M1_scaffold_609_27
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29557..30135
DNA (579bp) protein (193aa)
FOG: FHA domain n=1 Tax=Ruminococcus torques L2-14 RepID=D4M070_9FIRM
FOG: FHA domain
FOG: FHA domain {ECO:0000313|EMBL:CBL27430.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_609_28
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30487..30882
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PDC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC16526.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_609_29
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30935..31453
DNA (519bp) protein (173aa)
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:CBL27432.1}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:CBL27432.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Shikimate kinase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M072_9FIRM
L1_007_000M1_scaffold_609_30
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31634..32926
DNA (1293bp) protein (431aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=2 Tax=Clostridiales RepID=D4M073_9FIRM
Displaying items 1-30 of 59 in total

View Taxonomy