ggKbase home page

L1_007_000M1_scaffold_613

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_613_1
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(468..662)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PP61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK52330.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L1_007_000M1_scaffold_613_2
unknown

Not on your lists

comp(664..1089)
DNA (426bp) protein (142aa)
RNA polymerase, sigma 28 subunit, FliA/WhiG
L1_007_000M1_scaffold_613_3
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1693..2256)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Blautia sp. KLE 1732 RepID=U2D9F9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERI93430.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
tnpF1; transposase, fragment
L1_007_000M1_scaffold_613_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2204..2620)
DNA (417bp) protein (139aa)
Transposase and inactivated derivatives n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K8K5_9FIRM
Transposase and inactivated derivatives
Transposase and inactivated derivatives {ECO:0000313|EMBL:CBL01168.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L1_007_000M1_scaffold_613_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2958..3944
DNA (987bp) protein (329aa)
Transcriptional regulator, LacI family n=3 Tax=Lachnospiraceae RepID=A7B339_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49381.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
degA; HTH-type transcriptional regulator DegA
L1_007_000M1_scaffold_613_6
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4341..5345
DNA (1005bp) protein (335aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WSR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX73009.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
2,3-diketo-L-gulonate reductase
L1_007_000M1_scaffold_613_7
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5362..6006
DNA (645bp) protein (215aa)
HAD hydrolase, family IA n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RXW1_9FIRM
Hydrolase {ECO:0000313|EMBL:KJF38515.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
HAD-superfamily hydrolase
L1_007_000M1_scaffold_613_8
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6018..7370
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RWZ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC74365.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
citrate transporter
L1_007_000M1_scaffold_613_9
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7385..9511
DNA (2127bp) protein (709aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=S2YUP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG85679.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
putative N-methylhydaintoinase A
L1_007_000M1_scaffold_613_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9535..10233
DNA (699bp) protein (233aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B343_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49377.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L1_007_000M1_scaffold_613_11
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10237..10695
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YYZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD62982.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
hypothetical protein
L1_007_000M1_scaffold_613_12
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(10806..10967)
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YFW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD27461.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
L1_007_000M1_scaffold_613_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11209..11865)
DNA (657bp) protein (219aa)
Putative ribulose-phosphate 3-epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSK0_9FIRM
Putative ribulose-phosphate 3-epimerase {ECO:0000313|EMBL:EFB74326.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribulose-phosphate 3-epimerase
L1_007_000M1_scaffold_613_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11928..12299)
DNA (372bp) protein (124aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:EFB74327.1}; EC=5.3.1.6 {ECO:0000313|EMBL:EFB74327.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSK1_9FIRM
L1_007_000M1_scaffold_613_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12301..13239)
DNA (939bp) protein (313aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase, pyridine binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSK2_9FIRM
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:EFB74328.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_613_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13232..14095)
DNA (864bp) protein (288aa)
transketolase subunit A (EC:2.2.1.1)
Transketolase, thiamine diphosphate binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PI54_9FIRM
Transketolase, thiamine diphosphate binding domain protein {ECO:0000313|EMBL:EFB77634.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_613_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14088..14747)
DNA (660bp) protein (220aa)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Probable transaldolase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQS7_9FIRM
transaldolase
L1_007_000M1_scaffold_613_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14761..15459)
DNA (699bp) protein (233aa)
L-ribulose 5-phosphate 4-epimerase (EC:5.1.3.4)
Putative L-ribulose-5-phosphate 4-epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PI56_9FIRM
Putative L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:EFB77611.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_613_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15468..16946)
DNA (1479bp) protein (493aa)
L-arabinose isomerase {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
araA; L-arabinose isomerase (EC:5.3.1.4)
L-arabinose isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PI57_9FIRM
L1_007_000M1_scaffold_613_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16960..18543)
DNA (1584bp) protein (528aa)
araB; putative L-ribulokinase (EC:2.7.1.16)
Carbohydrate kinase, FGGY family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PI58_9FIRM
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:EFB77613.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_613_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18620..19327
DNA (708bp) protein (236aa)
Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PI59_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFB77614.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_613_22
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(19278..20912)
DNA (1635bp) protein (545aa)
Putative uncharacterized protein id=4260727 bin=GWF2_Planctomycetes_42_9 species=Kribbella flavida genus=Kribbella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
hypothetical protein
Tax=GWF2_Planctomycetes_42_9_curated
L1_007_000M1_scaffold_613_23

Not on your lists

comp(21182..21424)
DNA (243bp) protein (81aa)
Glycosyl hydrolase family 3 protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CT83_9CLOT
Xylosidase {ECO:0000313|EMBL:AHF23793.1}; TaxID=1393424 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig140.;"
Beta-glucosidase-related glycosidases
L1_007_000M1_scaffold_613_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21498..22202)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PI60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77615.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_613_25
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22199..24610)
DNA (2412bp) protein (804aa)
Glycosyl hydrolase family 2, sugar binding domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZQ9_9FIRM
Glycosyl hydrolase family 2, sugar binding domain protein {ECO:0000313|EMBL:EDM98412.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L1_007_000M1_scaffold_613_26
unknown

Not on your lists

comp(24674..25075)
DNA (402bp) protein (134aa)

This feature has no annotations

L1_007_000M1_scaffold_613_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25092..28082)
DNA (2991bp) protein (997aa)
bgl5; beta-glucosidase (EC:3.2.1.21)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PI63_9FIRM
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:EFB77618.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_613_28

Not on your lists

28376..29236
DNA (861bp) protein (287aa)
Transcriptional regulator AraC family n=2 Tax=Clostridiales RepID=R7DBZ1_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AHF23801.1}; TaxID=1393424 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig140.;"
hypothetical protein
L1_007_000M1_scaffold_613_29
Lachnoanaerobaculum saburreum, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30037..30741)
DNA (705bp) protein (235aa)
Uncharacterized protein n=2 Tax=Lachnoanaerobaculum saburreum RepID=E6LPD3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFU76328.1}; TaxID=887325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum saburreum DSM 3986.;"
hypothetical protein
L1_007_000M1_scaffold_613_30
Lachnospiraceae oral taxon 107, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30756..32006)
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Allobaculum stercoricanis RepID=UPI00035DDA06
Uncharacterized protein {ECO:0000313|EMBL:EGG91199.1}; TaxID=575593 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae oral taxon 107 str. F0167.;"
hypothetical protein
Displaying items 1-30 of 41 in total

View Taxonomy