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L1_007_000M1_scaffold_617

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_617_1
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..388
DNA (387bp) protein (129aa)
Glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase n=2 Tax=Eubacterium RepID=D6E321_9FIRM
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_617_2
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(885..1274)
DNA (390bp) protein (130aa)
Integrase family protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SYG2_ROSHA
integrase family protein
Integrase family protein {ECO:0000313|EMBL:AEN97912.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_000M1_scaffold_617_3
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1277..1783)
DNA (507bp) protein (169aa)
Helix-turn-helix domain-containing protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SYG1_ROSHA
helix-turn-helix domain-containing protein
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:AEN97911.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_000M1_scaffold_617_4
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2015..2833
DNA (819bp) protein (273aa)
Predicted transcription factor homolog of eukaryotic MBF1 n=2 Tax=Clostridiales RepID=R5PE84_9CLOT
Predicted transcription factor homolog of eukaryotic MBF1 {ECO:0000313|EMBL:CCZ07247.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
Predicted transcription factor, homolog of eukaryotic MBF1
L1_007_000M1_scaffold_617_5
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2920..3336
DNA (417bp) protein (139aa)
Two-component response regulator n=1 Tax=Clostridium sp. CAG:127 RepID=R5NYQ7_9CLOT
Two-component response regulator {ECO:0000313|EMBL:CCZ07244.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
two-component response regulator
L1_007_000M1_scaffold_617_6
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3474..3722
DNA (249bp) protein (83aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SYE7_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN97897.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_000M1_scaffold_617_7
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3726..4025
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NSS5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ07240.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
Plasmid stabilization system protein
L1_007_000M1_scaffold_617_8
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4054..4281
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Acinetobacter pittii ANC 3678 RepID=N9EP54_ACIPI
Cytotoxic family protein {ECO:0000313|EMBL:EYT26331.1}; TaxID=1310723 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii 1564232.;"
Colicin E3 catalytic
L1_007_000M1_scaffold_617_9
Desulfosporosinus sp. HMP52, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4271..4579
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI00036E6E09
Uncharacterized protein {ECO:0000313|EMBL:KGK89374.1}; TaxID=1487923 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. HMP52.;"
hypothetical protein
L1_007_000M1_scaffold_617_10
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4572..5873
DNA (1302bp) protein (434aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF26846.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
L1_007_000M1_scaffold_617_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7106..7336
DNA (231bp) protein (77aa)
Sigma-70 region 2 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKB5_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:CCZ78738.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
sigma-70 family RNA polymerase sigma factor
L1_007_000M1_scaffold_617_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7294..7632
DNA (339bp) protein (113aa)
Sigma-70 region 2 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKB5_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:CCZ78738.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
sigma-70 family RNA polymerase sigma factor
L1_007_000M1_scaffold_617_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7634..9115
DNA (1482bp) protein (494aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VD85_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78737.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_617_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9414..10415)
DNA (1002bp) protein (334aa)
Transcriptional regulators (EC:5.1.1.1)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5K9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78736.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_617_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10726..12222
DNA (1497bp) protein (499aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL24_9FIRM
L1_007_000M1_scaffold_617_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12306..13604
DNA (1299bp) protein (433aa)
Putative sugar-binding secreted protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5USN0_9FIRM
Putative sugar-binding secreted protein {ECO:0000313|EMBL:CCZ78734.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L1_007_000M1_scaffold_617_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13724..15097
DNA (1374bp) protein (458aa)
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKA9_9FIRM
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CCZ78733.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L1_007_000M1_scaffold_617_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15097..15984
DNA (888bp) protein (296aa)
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia sp. CAG:18 RepID=R5VD81_9FIRM
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CCZ78732.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L1_007_000M1_scaffold_617_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16054..17640
DNA (1587bp) protein (529aa)
Alpha amylase catalytic region n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5K5_9FIRM
Alpha amylase catalytic region {ECO:0000313|EMBL:CCZ78731.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
alpha amylase catalytic region
L1_007_000M1_scaffold_617_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17753..19951
DNA (2199bp) protein (733aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL20_9FIRM
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:CCZ78730.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
methyl-accepting chemotaxis sensory transducer
L1_007_000M1_scaffold_617_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20011..20754
DNA (744bp) protein (248aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5USM4_9FIRM
1-acyl-sn-glycerol-3-phosphate acyltransferase
L1_007_000M1_scaffold_617_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20808..21224
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78728.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_617_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21325..21567
DNA (243bp) protein (81aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia sp. CAG:18 RepID=R5VD75_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCZ78727.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_617_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21639..23201
DNA (1563bp) protein (521aa)
Peptidoglycan-binding LysM n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5K3_9FIRM
Peptidoglycan-binding LysM {ECO:0000313|EMBL:CCZ78726.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
peptidoglycan-binding LysM
L1_007_000M1_scaffold_617_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23236..24219
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78725.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_617_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24353..25570
DNA (1218bp) protein (406aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=1 Tax=Roseburia sp. CAG:18 RepID=R5USL9_9FIRM
Cell wall-associated hydrolases (Invasion-associated proteins) {ECO:0000313|EMBL:CCZ78724.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
NLP/P60 family
L1_007_000M1_scaffold_617_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25580..26251
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UK98_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78723.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_617_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26255..27130
DNA (876bp) protein (292aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VD70_9FIRM
L1_007_000M1_scaffold_617_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27186..27752
DNA (567bp) protein (189aa)
HD domain protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5J6_9FIRM
HD domain protein {ECO:0000313|EMBL:CCZ78721.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_617_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27749..29035
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78720.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
Displaying items 1-30 of 38 in total

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